AMCG00018710 (git2)


Basic Information

Item Value
gene id AMCG00018710
gene name git2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18846576 ~ 18869867 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018710
CCCGTCTCTGTTGTGCTCACTCAGCCCAGGCGCAAAACAAGACGAGCCGTTTTTGtggtttttcctttctttcgtGCGCGTTGGGACTGATAGCGACCCACTTGCACACACCCGGGATCATATGCCTGTCTAAATTAATCGAAGCGGTTTTTTTTATTGACCTTTAAAAGGcctttttatttggaaaaaaaaggaaggatGTCGAAGCGGCTGCGGAACAGTGAGGTTTGCGCTGATTGCAGCGTTCCGGACCCTCGCTGGGCCTCTGTGAATCGAGGAGTACTGATTTGCGATGAGTGCTGCAGCGTACACAGAAGTCTGGGCCGGCACAGCTCACAAGTGCgacatttaacacacacaccgtGGCCTCCAACCCAACTACAGatgGTCCAGACATTGTACAATAATGGTGCAAATTCAATATGGGAGCATTGTTTGTTGGATCCTGCATCTGTAATGAGTGGAAAGCGCAAAGCCAACCCACAGGATAAACTGCACCCAAACAAGACAGAGTTTATAAAGGCCAAATACCAGATGCTGGCGTTTGTCCATCGGATGCCGTGTCGAGAAGATGACAGTGTTACGGCCAAGGATCTTAGTAAGcaaCTACATTCAAGTGTCCGAACTGGGAATCTGGAAACCTGTTTAAGGTTGCTGTCCCTAGGAGCTCAAGCTAACTTCTTCCACCCGGAGAAAGGGAACACGCCTCTTCATGTGGCAGCAAAAGCAGGGCAGGTTTCTCAGGCAGAGTTACTCACAGTGTACGGGGCTGATCCTGGGGCACCTGATGCCAATGGGAAAACGCCAATCGACTATGCAAGgCAAGCAGGACACCACGACCTAGCAGATAGGTTGGTGGAAATTCAGTATGAACTTACTGACCGGTTGGCATTCTATCTGTGTGGGAGAAAGCCAGATCACAAAAGTGGACAACACTTTATTATCCCTCAAATGGCAGACAGTAGTCTGGATTTATCAGAATTAGCGAAAGCTGCAAAGAAAAAACTTCAGTCTCTCAgtaatcatttatttgaagaACTGGCAATGGATGTATATGATGAAGTGGACAGAAGAGAAACTGATGCAGTGTGGCTAACAACTCAGAATCATAGCACCCTGggtAGACAGAAGCTTGCGAGATTTAATGCTCATGAATTTGCAACCCttgttattgatattttaaGTGATGCAAAGCGTCGACAGCAAGGAAATTCTGTCGGAAGTCCAAAAGAAAACATTGAGCTGTTCCTAAAGAACATAGGCAGTCGGCATGGCAGTGAAAGCCAGGACAACGACCAGCCCGACTATGACAGTGTGGCTTCAGATGAGGACACAGACCAGGAACCACCTTCTGGTAAAGGAGATAGGACCAAGagTGTGGACTCGGACTTGTCAGACGGACCAATCACGGTGCAAGAATTCATGGAGGTTAAAAATGCCCTGAGTGCATCTGAGGCAAAGATTCAGCAGCTCATGAAAGTGAACAGCAACCTCAGCGATGAACTCAGGCTGATGCAGAAAAAGCTGCAATCACTGCAAAGCGAGAACACCACTCTCAGGCGGCAGGTTACAACCAATATCTATCAGGTCCCGACTGGTTCAGAATACCCTGACCCCTCCAGCCCTTCAGCCCTGAAGCGGCGGCCGTCTGCGCGAGGCAGCCGGCCCATGTCTATGTATGAGACTGGCTCGGGTCTGAAGCCCTATCTCCCCAAGGGAGAGGCCACCTACACAGAAGAGGGTATTCCCACCCTGCAGCCCTTCCCTCCTCATATCGGGAGGAGTGCTTTCGTGACCTCCTCTTCATCTCTCCCTTCCTTCCCTTCCACGCTCTCCTGGTCGCGGGACGAGAATGCGCGAAGGgcCTCCAAGCTGGAAAAGCAGACCAGCATGCCTGACAGTGACTATGACAACACACCCAATGACTCTGAACTGGAAGATACAGGCCTGTCTCGCAAGGGCAAGCTGAGAAGCAGTGGTTGGCTGGGGGAGGGGTCCATCCCGGAGCTGGACGACCTGGAGGCCGAGCCGGACGCCACCCTGCCCAGCACCGAGGACGTCATCCGCAAGACCGAGCAGATCACCAAGAACATCCAGGAGCTTCTGCGAGCCGCACAGGAGAACAAACACGACAGCAGACCCTTTGAGCGCGAGAGCCTGCGACGGCTCAGGCACAGCCTGGGCTGTTTCAGTACCTTGGTTCCCTGGGCCGAAAAAACTCCCTCTCTGCAGCCTCTCAGCCTTCACCAGCCCGACCCTGACTCCTGCTTTATACCATGCTCAGAAAGAATACATGTTGCTGTGACTGAAATGGCTGCCCTCTTTCCCAAGAAACCGCGATCGGAGCTGGTGCGGGGCTCCCTCAGGCTGCTCACATCCAGCGCCTACCGCCTGCAGTGCGAGTGCAAGAAAGCGGCGCCGGGGGAGAGCAGCGTGGCACCTGACATGCAGCTGGTCACGCAGCAGGTCATCCAGTGCGCCTACGACATCGCCAAGGCCGCCAAGCAGCTGGTCACCATCACCACCAAAGAGAACAGCAACTGACCCCCGCACCTGCGCCGCTCAGCAAGGGTGGGAGACGTCCGCTCAGTTTCCTTTAGTGCTGTTTTATTCtcaaattttatatttacaagaaaattaagaattggagacattttagttttttttttttcctattttatatcagtattaatatttgcatgtaattttttttttatttaaaaaaataaatacaaaaaaaaccacAGCCAATTTAGCCAAATGCCTTATGGCAAAGCCTGCAGTATACTTCCATCAAAGCATTACTCAGTAACTAACGTGTTCATTCAGACCGATATGCTATAGCACTCTTACAAACCTCCCAGCCCCCTGCCTTGTGCTGCAGAGGGAACACATGCACTTGGTTTAAAGAACTGAATATGAGCCCATTTGAAAGCGGTGGAATAATGTGAATGCTGTAAACGGGAAGATTGCGGATTTCCGAGTGCTTTGATCAGTGGACACGGTACTGTACAGCAAGCGTCACCATTTAGACAATCCTGAAGACTCCCGGTCCAAAAGCTATGGTAGCTGGAGTGTGGGCCTCATTAATTCATAGGAGAGTCCATAGAAAAGCCCTGGTGCTAGATTACGAGCTGCTTTCCTGCATACTGACTCAGTATTTTAATCCATCGGCACGGTTTGCTGACGACACTTACAACATGCCAATCCCACGTGTTTTGCTCACTGTCGTAATTTGTGAAACTAAAAGCCATACCTTAGTTTTATTACGAGACTAATATACCTCATGTACAACACATTGTCACAGGAATGAATCGCCCTCATTTcccaacaacaaaataaacaagaactAGAAACTTAAACCGTAGTAGTGTCTGCTAGTCTATGGATAGAAGTTTGGCgatacttgttttttgtttgtaatcaaAAAGAAACTGACTCGCTTTCTGTCATTGCTTAAAGTCCTATGTTACATGTAATCATAAAGACAGACTAATCGAAGTGGTGAATAATAGGATGGGtggttttaatgaaaacatctcTTTTGCACCTTTTTCTGAGACattgtaatttttgtttgtccattttattgcttcccttgCTACATATGTTGTACTTTTGGTTTCAAATGCACTTACCTGTATGCTTCCTCCCCTGGTTTCTGTATGATGTGTGGAGACGTTTCTTCCAGGCAGTGCATTCAAAAGCAATTTGCGGAACAGAACCTCACCACACCAGCAAtctattgtacatttatttacttttgtgttgTAGTGTTGCCTTTTGCAGAAACTGCGACTTTTCTTTACTCTGTGCCATATATTcgttgatttttatttgtgtccTAGGATCAAGTGCAGccagattgtttgtttttagattttttggtTTACccctcaaaatgtttttttttttaatttaatgctgctaggatattaattaatgttaaactAATGGAATGGAGGATAAGGTTGTAGAGCCACTTCCCTTTCATAACTCTGCTAAACGAAGGGTCTTTTACAGTTCAGATTCACAACCTAACTCACTTTGTCAGTGTTATACTTGAAACTCAGCAAGTGAAAATGTCAGTTACATGTCAGTCTATAATGCAAACTTGGCAGGTCTTCATGGTGATGTCAGTGATGCAGTAATCGCTGCATAGGAAAacttgccttttattttttaataaacttatttataactgtaaccttaaatacacatttgtttttgactgtttaatgtataaatttattgtaaaattacTGTATCTGCcttttgtgttatatatatttttttgcctgCCAATTATGCAATAAATCAGGCttcaaaat

Function

symbol description
git2 Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to be involved in presynaptic modulation of chemical synaptic transmission and regulation of synaptic vesicle exocytosis. Predicted to act upstream of or within behavioral response to pain. Located in nucleoplasm.

NR:

description
PREDICTED: ARF GTPase-activating protein GIT2 isoform X1

GO: NA

KEGG:

id description
K12487 GIT2; G protein-coupled receptor kinase interactor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018710 True 4331 mRNA 0.46 21 18846576 18869867

Neighbor

gene id symbol gene type direction distance location
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 25289 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 111992 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 117070 18729036 ~ 18729506 (+)
AMCG00018701 NA coding upstream 156337 18685139 ~ 18690239 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 187178 18646519 ~ 18659398 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 6903 18876770 ~ 18885979 (+)
AMCG00018720 mmab coding downstream 177921 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 203237 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 238509 19108376 ~ 19116265 (+)
AMCG00018724 NA coding downstream 283591 19153458 ~ 19154597 (+)
G118013 NA non-coding upstream 115764 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 170350 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 628477 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 865637 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1261464 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 586275 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 597956 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 609824 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 707097 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1124259 19994126 ~ 19994329 (+)
AMCG00018712 NA other upstream 6481 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 125233 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 863559 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1776906 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3864871 14954564 ~ 14981705 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 24468 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 353301 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 503605 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1101272 19971139 ~ 19974730 (+)
G118557 NA other downstream 1389510 20259377 ~ 20260940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009293 git1 coding NC_007126.7 CM002899.2 28431621 ~ 28480576 (-)