AMCG00018711 (LOC106580268,LOC105014447,LOC106585675,LOC103353553)


Basic Information

Item Value
gene id AMCG00018711
gene name LOC106580268,LOC105014447,LOC106585675,LOC103353553
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18809376 ~ 18821287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018711
ATGTCCCACCAAGACGCAGCGGCTCCCACTGGGAGTCTAACCGGCCAGGGCTCCACCAACGCCGGCTATAACACCAACCCCGTGCCGGTGATCACCCAAACGGACTCCAGGGACAAATGGAGCAAAAAGATGGATTTTCTTTTATCTGTGATAGGCTTTGCTGTGGATCTGGGAAATGTCTGGAGGTTTCCATATATCTGTTATCAAAACGGAGGCGGTGCTTTTCTCATTCCCTATATCCTGATGGCTATTTTTGGAGGGGTGCCGCTGTTTTACATGGAGCTGGCGCTCGGGCAGTTTCACAGGACAGGGGCGATCTCTATCTGGAAGCACATCTGCCCTATATTCAAAGGAGTCAAGACCTCAGGGAAGGTGTGGGTGGACGCTGCAGCTCAGATCTTCTTCTCTCTGGGTCCTGGCTTCGGGGTGCTTCTAGCCTTGGCTAGCTACAACCCCTTCACCAACAACTGCTATCGggATGCCTTAGTGACCAGCCTGGTGAACTGCCTGACTAGTTTCATATCAGGGTTCGTCATCTTCACTGTGCTGGGCTACATGGCAGAAATGAGGAACGTGGAAGTTGAAGATGTGGCCAAAGATAAAGGTCCCAGCCTGTTGTTCATCACCTACCCTGAAGCCATTGCAAACATGGTGGGCTCTACGTTTTTTGCCATCATCTTCTTCGTGATGATGATCACGCTCGGGCTCGACAGCACGTTTGGGGGGCTGGAGGCCATCATCACTGCGGTGATGGACGAGTACCCCCAGTACCTCTCCCAGCGGCGGGAGCTGTTCGTGCTGGGCCTGGTCATCGTCTGCTTCCTGGGGTCTCTCAGCACCCTCACCCACGGAGGTGCCTACGTGGTAAAATTGCTGGAAGAGTTTGGTGTGGGCAGCTCCATCATTGCGGTTGGGTTCCTGGAAGCCATCGCCGTGTCCTGGTTCTATGgtaTCACGAGGTTCTGCAATGACATCAAATCCATGTTGGGCTTCAGTCCAGGAATCTTCTGGAAAGTCTGTTGGGTGGCTATCAGCCCTGCCTTCCTAGCATATATCATAGTAAGCTCCCTGCTGGACCAGCCCCCTCTCATCCTCTTTGACTACAAGTACCCTGACTGGAGCATTACTGTGGGGTACATCATCGGCGCCTCCTCGTTCATGTGGATCCCCATCTACATGGTCTACAAGTTGGTGTGGACCCCCGGCTCACTGAAGCAGCGCCTGGCAGTGTGTATGCGCCCAGAGAGGACGATCCGTGACCCTCAGACTGACTCCCTCAGCATGACGCCTGTCCCCTAA

Function

NR:

description
PREDICTED: sodium-dependent serotonin transporter-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0006837 serotonin transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018711 True 1299 mRNA 0.54 11 18809376 18821287

Neighbor

gene id symbol gene type direction distance location
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 74792 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 79870 18729036 ~ 18729506 (+)
AMCG00018701 NA coding upstream 119137 18685139 ~ 18690239 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 149978 18646519 ~ 18659398 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 203514 18590966 ~ 18605862 (+)
AMCG00018710 git2 coding downstream 25289 18846576 ~ 18869867 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 55483 18876770 ~ 18885979 (+)
AMCG00018720 mmab coding downstream 226501 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 251817 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 287089 19108376 ~ 19116265 (+)
G118013 NA non-coding upstream 78564 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 133150 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 591277 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 828437 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1224264 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 634855 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 646536 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 658404 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 755677 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1172839 19994126 ~ 19994329 (+)
AMCG00018702 NA other upstream 88033 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 826359 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1739706 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3827671 14954564 ~ 14981705 (+)
G117383 NA other upstream 4021243 14786623 ~ 14788133 (+)
AMCG00018712 NA other downstream 6310 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 73048 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 401881 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 552185 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1149852 19971139 ~ 19974730 (+)

Expression


Co-expression Network