AMCG00018716 (gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968)


Basic Information

Item Value
gene id AMCG00018716
gene name gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18876770 ~ 18885979 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018716
CGAGCCGCTGCCAGGCTTCCGGGTCTGCCGCGCCGACACACGCACCGCCCGCACCGCCCGCACCGCCCGCACCGCCCGCAAACATGGCTCTGCTAGCGGAGCACCAGTTCAAACAGCTGCCAGCCGACAAGCAAGTGGATACCAGGTCGTTTTTGGAGTCGGTGTCCTATCTTCCGCCGTTCTTTGACTGCCTGGGCTCCAAAGTGTTTTCTCCTATCAAAGCGGACGTTAGCGGAAACATAACAaaaaTCAAGGCTGTTTATGACACGAACCCCATCAGGTTTAAGACTCTTCAGCAGATCCTGGAGGCTGAGAAGGAGATGTACGGAGCAGAGTGGCCTAAAGTGGGAGCTACCTTAGCACTGATGTGGCTGAAAAGGGGTCTGAAGTTCATTCAGGTCCTGCTTCAGAGCATTGCAGATGGAGAGAAGGATGACGCCAATCCCAACCTCATCCGGGTCAACGCCACGAAGGCCTACGAGCTGGCGTTGAAGAAATACCATGGCTGGCTGGTCCAGAAACTTTTCACGGGCGCCATGTATGCGGCTCCGTACAAGTCGGACTTCCTGAAGGCCCTGTCCAAAGGTCGTGAGGTGAAGGAGGAAGACTGTGTGGAGAAGATCCGCCAGTTCCTGGTCAATTACACTGCCACTGTGGACGTCCTCTATGAGATGTATACCAAAATGAACGCCGAACTGGACTACACTGTCTGACCCCTACCCACCCCACCCTCCTTGCCAGACTTACACAATGCAGTCACTAtctttttattactattttttactTTCCATCCTGCCAAGGATGCCATTTTCAAGAGCAATATGGAGACCCTGTTCTACTTCTTGATCACCACTCTGGGGACATAAGTGGTGCTTTCTCAGCTCACATGGCTTGTTAACCTGGGATAGAGGAgggtgttttaaatgtatgcaatatAGTGTGCCTTACTTTTATAACTGACACACCAGGGAATAATACTGTCAACTGAATGTAGTAAGTGCACTTTTTAATCATTTGCCTTGCCTTTGAAAAAGCGGGTCGTCCTTCAGAAGCCCATTTCCAAAAACATGGAaagaatttcatttttatctgaATTTATTGTCATTCAAGTCTACCTTAACTCAGTCAGTCACCGGCAACTTGAAAATGTCATCGCCGTTCATCTACAGTAATACGGTCTACTGTAGTTTTTAAGCAGGGAcactttttgttcattttctcacacaaaatTGAGTCCAACATACTGTATTAGGAATATTACAGTGTGTGGCCTAAGGTTAATCCGGATTTTCCAGGGATTTGGTGTCTCAGTGATTTGGAGAATGATAGTCATGAATGGATGTTTGTTTGGCTGTTAAAGGAGTGAAACCCAGATTTACTCGTATGTGTTTTGAAGTTGTTGTTGAGGATTTTCCTTTATTACATACTAATAGTTGAAATGCTGGAAGTTTTGGTTATATTTTTAACCACATTCCTTTCACTTCCACATACATCCCTGCTGATGATTTTGTGGGGCTGTTACTTTATTCCCCTCAGTCTCTACTTGTGGGAAATGTTCATGGACCTTAGCCCTTCTTTTCTCACAAATGTAACTATGACAAGAATGCGCTGTACAGCTCTGCTCCATAAGATTAGGTTTTGAATGTGGGGGGAAATTGGCATGAAATGAGCCAGGCAGACACCGTACCagacaaatattttctgttcttCCATGCTTTAGGATTCTTTGAGCTCCATTTCTTAGGTCATAACATGTAAATGGTAAAATGTAGACAAGATCACAAAAAACTGCAAGCTTGCTTTTTTAACATTCATTCTGGGGGCTTGtcatgcatttgtttgataTTAACTTGTAAATTATTGTTCTTAATGTGAACATTTCTGATGATAAAGAACTctaatgtgaaatgtttgtaaAGAGGCATCTTCACAGAATCAGAAATCCTCCATCCCCTTTCTCTTGGGACTGTGCAGCTctcactaaagtattttgaaaatgaatattttgaaaatggcaGTTCCCAAAGGCTTCATTAACTTCTGAGTTCTAAGGAGCTTGTCAATATTTTACAGCTTTTTCATAAGATGTGAAGGTTTTACAGTGTCGTCTTAAAGGGACAACAACAAAGTATAATTTTGTCTTTGTCTCGCCATGAGAGGAAAGATGCATTTTACTGTACAGTTAGACAGGACAATCCTGATCAGAGCTTTAATAAACTGTCGCATTACGATCTCTGCATGTTTGCTTGTTCATTCCTGTTCCTATTTGGTGATACAAAAAAAGAGTCCAAAAAAGTACACCAAAAATAATATAGGAGTATTAATTAGCACATCTGTCCAAATGCtcttcataaaaaacaaatgcttgttTAAAGATAATGAATCCAAGATGGGGAGGGGAAGTTAACAACTAAAGGTCTAATGACGAGAAATATGTAGCAAAGATCAACCTTGTATCCACCCACCTCAAATGTGGAAGTCATGAGAGCAGTGGTTGTcgtttttgattttaattattaaagtcaAAGTGTCCATTTCATAAGCGTACCTAGGCCttcaaagtaatttatttagatGCTCTGTAAGCTAATGtccattgcatttaaatgaggaggTGGTGCCATGTGCATTGTCATAGTGCATGCTGCATAGTCTATTCAACTTTTGCtataccttttatttttactttgttacATTTTCTGTGCTTTACAACTGGATGGTAAATTAGCATAGGTTTATTATAACAGGCTGGTACAGATCACATGACAGGAAACAATGTATGAAAAATGGCAGGAAATCAACAATTATATCAGCTACTCCTTAACATAGAAATTAGAAGGTGTATTATTAAGtacatattgatatatattcaCTTTACTTGGATGATACTGGAAATACATAGGGGTTTGGGGATAATATTGCTTTTACCATGTTGTCTTCCTGCTACATATATCCGATAGTGATTTGAAAATGTGCGTattgaaaatgcaacaaaatcaTACccattaatatgtttttctttctattaaTTTTCTTGCTGGACCAAACTGAGACCTTGCTCTGCCTTCTCTCTTAGTGAGCTAGCTACAATTAATCTGTTAGTCACCGGCATGCCTCTACTTAGTGCAATATTAACTGACCGGCTGTATGGTTTTATACTGCACTTTGCTATTTACCACTCACTGCACTAAAGAGGCCAGGGTTGTCTTaagtactgtatgtgtttttacttGACTTGTAGATTATCTAATTCCAAAACTGAAACATGAATTGGCTTAACCTTGTAACAGTGAAGACTAAATAATTGGTTGATGTTCCTGCTTTAGTTACAATTGTACAAGTGTTTGAAATTTAGAAATGTGACTATTTATTGTACAGAACAAGCACAAGTATATCATTCTACACTGATGTATTCTAATATTTATGGAAATAAACTGAGCTGTTACATTGTGA

Function

symbol description
gltpa Orthologous to human GLTP (glycolipid transfer protein).
gltp Enables glycolipid binding activity; identical protein binding activity; and lipid transfer activity. Involved in intermembrane lipid transfer. Located in cytosol.

NR:

description
PREDICTED: glycolipid transfer protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018716 True 3453 mRNA 0.40 5 18876770 18885979

Neighbor

gene id symbol gene type direction distance location
AMCG00018710 git2 coding upstream 6903 18846576 ~ 18869867 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 55483 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 142186 18733107 ~ 18734584 (+)
AMCG00018708 NA coding upstream 147264 18729036 ~ 18729506 (+)
AMCG00018701 NA coding upstream 186531 18685139 ~ 18690239 (+)
AMCG00018720 mmab coding downstream 161809 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 187125 19073104 ~ 19078777 (+)
AMCG00018725 NA coding downstream 222397 19108376 ~ 19116265 (+)
AMCG00018724 NA coding downstream 267479 19153458 ~ 19154597 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 279907 19165886 ~ 19181728 (+)
G118013 NA non-coding upstream 145958 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 200544 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 658671 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 895831 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1291658 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 570163 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 581844 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 593712 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 690985 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1108147 19994126 ~ 19994329 (+)
AMCG00018712 NA other upstream 36675 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 155427 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 893753 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1807100 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3895065 14954564 ~ 14981705 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 8356 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 337189 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 487493 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1085160 19971139 ~ 19974730 (+)
G118557 NA other downstream 1373398 20259377 ~ 20260940 (+)

Expression


Co-expression Network