AMCG00018719 (kctd10,LOC105014907)


Basic Information

Item Value
gene id AMCG00018719
gene name kctd10,LOC105014907
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19073104 ~ 19078777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018719
aaagaactttaaACTACTAAACTTCCAGTTATCTTGTGATGTGACACAAATTTCAACAGGATCTCATGGAAGAGATGTCGGGAGAAAGCGTGGTGAGCTCGGCAGTGCCGGCGGCTACAACTCGGACCACCTCCTTCAAGGGCTCCAGTCCGAGCTCCAAGTATGTGAAGCTGAACGTGGGGGGGGCGCTGTACTACACCACCATGCAGACCCTCACAAAGCAGGACACCATGCTCAAGGCCATGTTCAGCGGCAGGATGGAGGTGCTGACGGACAGTGAAGGCTGGATCCTGATCGATCGCTGCGGGAAGCATTTTGGGACGATTCTCAACTACCTGCGGGACGGCGCCGTACCTCTGCCCGAGAGCCGCAGGGAGATCGAAGAGCTGCTGGCAGAAGCCAAGTACTACCTGGTACAGGGGCTGGCAGATGAGTGCCATGCAGCGCTTCAGaacAAAGATATGTACGAGCCGTTCTGTAAGGTACCTCTTGTCACATCGCCCAAGGAGGAACAGAGACTCATCGCCACCTCTAATAAGCCGACTGTAAAGCTTTTATACAACAGAAGCAACAACAAATATTCCTATACCAGTAACTCGGACGACAACATGCTGAAGAACATCGAGCTGTTCGACAAGCTGTCTCTGAGGTTCAACGGGAGGGTCCTGTTCATCAAGGACGTGATCGGGGACGAGATCTGCTGCTGGTCCTTCTACGGGCAGGGCCGCAAGATCGCCGAGGTGTGCTGCACGTCCATAGTCTACGCCACCGAGAAGAAGCAGACCAAGGTGGAGTTCCCCGAAGCCCGCATCTACGAGGAGACCCTGAACATCCTGCTGTACGAGTCCCAGGACGGGCGCGGGCCGGACAACGCCCTGCTGGAGGCCACGGGGGGCGCGGCGGGGCGCTCTCATCACCTGGACGAGGACGAGGAGAGGGATCGCATCGAGCGCGTCCGGAGGATCCACGTCAAGAGGCCAGACGACCGCACACACCACCACCAATGACCGGGCCACCCCCTGGCCTGCCTTACAAACTTCCGGTGCAGTTCACCTTAAACCACAGCCGCTCCTCCGGTCGCTGCCCTCTCGAAGCCTGTGTCACTGAGGCCGCCCCCTATAGAGACCACAGGCTGCAGCTGGTGAGGAGAAGTTAGTTCCCTTCATCTTCagtgactttttaaaaattgtatgtaGAAGTTCTTTGACCTGTACTGAAGCAATGACCAGTcttaacacaacacaaatccAGTTGTCCATATTCCCCCctaaaaatgtctaaaatgcTTCCGGCTTCAATTGGTCTTGGGTGACAGGTATCTGACGTGCTATACAGGCGGATGTCGCCATTTCACTTGCATGGACTGAGGAGGAACAGTCGGCCCGAGCGCTGACATGCTTCTTTAGATCAGTAAGTTGTGAAGGCACGAGCTACAGGAGATGAAGAGTGCTGTGGGGCTCCAGCAGGAGGGTGCACTGCTATGCATGCTGTACAGAGgttatagattattttttaagcGCTTttagttaaacaaacaaaaacatatattcaaAATCCAGGAAGGCGGGTTATACAAATTACTGTGTAACAGCATAATGTGGTCCAAGACTGAAGCATTCCTGTATCTATCACTCCATTTATGATGCATCAGTACTTAAATGATAGGTCCTGTATTAATTAAGCCAACAGGGCACTTGGCCTTCAGTGTAACGAGTTCGTCCTGCAGTATCTCGTAGATGTCCGCTTATCTCTACTTGTGGAAAGAAAAGCTGTTCGCCTGCTAAGATCTCAATTCCAGCTTCCGTGGTAAAATAAAAGAGCAGCATTAGGtgaaggaagaagaaaataaataaataaaaaggcaacCAAGAccgttttttgtattttgggcATCGGCATATAGACTTCATTCCAAAACCAATTCAAGAAACAGGCCAAGAAATAACGTTTTAAAAATATAGCAAATGCACATTTTCCTTCAGTATATTAAGACGTCTGCTCTTTAACTTGTATGCGTGTGAAGGATaggttttttttatgtgtgtgtgcatcggGTAGTTGTAAATAATGAGCTATGGATTGTTTTAATCGACTACAATCTCCACTCCatactgtgtgcagtgtttATACACCGATTCTGCTCACCTTCCAAAGAGTGCAGCAAACGGTTCAAAAGCCTAGTTTACTTTTTCTGTGCGGTTAAATCAAACGTTCAGATGGGTGGGATTAACGTCTGAAGAGCCCAGAGGGACGGTAGGGGTTTGGTTGCATCTTGTTAAAGCCTTGATGTTCATTATGGAATAGAATGCAAAGTGtttcttgagagagagagagagagagaatttgaaCATTTCTCTTGTGTGTGGTCTTATCCAGAGGTTCATGAAGATGGGTTATGAACGATCTTGCAGAGTGTTTTGATGCTGTTTGCCTCCAGAGGGCAGTGtgagctacaaaaaaaaagctccGGTAGAACCGATATCATTTTGGTCCGTCAAGGGAGCTTTAACGGTGTCGGAATTAAACTGTTCTTCATTCCAGCTCATACACGGGAATGTATGTTTGTACTTTGCTAGAGAAAGAGATGCATTTTTTACAATCATTATACATACAAATTTCTTTTTGTGTGGCTATACACAGAGAAAGGCTTCAACTATATTTATAGATGcagatcaaaataataaaaactaaaagagTA

Function

symbol description
kctd10 Enables transcription corepressor activity. Acts upstream of or within circulatory system development; pectoral fin development; and regulation of macromolecule biosynthetic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including brain; fin; head; pericardial region; and pleuroperitoneal region. Orthologous to human KCTD10 (potassium channel tetramerization domain containing 10).

NR:

description
PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 isoform X1

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018719 True 2698 mRNA 0.47 7 19073104 19078777

Neighbor

gene id symbol gene type direction distance location
AMCG00018720 mmab coding upstream 22465 19047788 ~ 19050639 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 187125 18876770 ~ 18885979 (+)
AMCG00018710 git2 coding upstream 203237 18846576 ~ 18869867 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding upstream 251817 18809376 ~ 18821287 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding upstream 338520 18733107 ~ 18734584 (+)
AMCG00018725 NA coding downstream 29599 19108376 ~ 19116265 (+)
AMCG00018724 NA coding downstream 74681 19153458 ~ 19154597 (+)
AMCG00018730 svop,svopa,LOC107696058 coding downstream 87109 19165886 ~ 19181728 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding downstream 127278 19206055 ~ 19222946 (+)
AMCG00018737 coro1c,LOC106584990 coding downstream 196132 19274909 ~ 19282966 (+)
G118013 NA non-coding upstream 342292 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 396878 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 855005 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1092165 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1487992 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 377365 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 389046 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 400914 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 498187 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 915349 19994126 ~ 19994329 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 164148 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 233009 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 351761 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1090087 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 2003434 17068212 ~ 17069670 (+)
AMCG00018732 NA other downstream 144391 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 294695 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 892362 19971139 ~ 19974730 (+)
G118557 NA other downstream 1180600 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1293442 20372219 ~ 20374812 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01113148_01115596 KCTD10 coding CI01000071 null 1113148 ~ 1116722 (+)