AMCG00018734


Basic Information

Item Value
gene id AMCG00018734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19289189 ~ 19296001 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018734
GCAGTCCCTCACATCCTCGCCTCGCTTCTGGGAACTGAAGCTGCACACTTCCTGTATCCTGGCACACAGGTACTGCGAGGAGATGCAGGCGTAGACACACTTGACGACCCTCTGTTGGCTTCTCTGAAGAAGaacacaaacaacaccaTGCAGAGGGCCTGGCTGTTGCTGTTGATGAGCTTTGTTCATCTCAACCCAGCCCTTTTAGAAACCACTGTACCCCACCCCCTTCTGCTTTCCAGTGTGAAAGAGCATCAAACGAAATCTGCAACATCTCCTCCCGCCTTGATAACAATGCCCTCGGTGACAAGAAGAAACAGTACTCCTTCAACAACAACGCCATCAGGGAGTACGATTGTGGCCACCACTGAACAGAATGTGGCAACCAAGGAAAACGAGGAAACCTCAACCAGTCCAACTCTGGCTACCACCCCTGAGGTGTTTAGAATGAATCCAAGCACTCCTGGACCGGAACACAACACTGTAGttacaacacacagcacagagagagaagccAACGTCTCTGGTGCTGCTTCGAACTCCGACTCGACCGCTGGTCCCACGTCAACCATTTCCTCGACTTCAGCTTCAACTGCAGGCATTGCACTGACGACGTCTTCCCCACCTCAAGAAGAACTTACCACTCAAACAGATCACCTTGATACCACCACAAGCCCAGCTGAGTTATTTGAGTCCTCATCTGCGCCGTCCTCATCTGCGCCGTCCACACCTGCGCCGTCCACACCTGCGCCGTCCACACCTGCGCCGTCCACACCTGAACCGCCCTCCACCACCAGCAACTCGACCAATTCTTCCGTGCCTTTGATACCCCGGCTAAAACCCCGTAAACCAGAAATACCCACGGCTACCCAGCAGGTGATCAACCAAACCACTCCAACTTCCAAAACGACCACAACTAAAAGCAACCCAGGGGTCCATCCATTCTCCCCACATTCCCCTAGGCGAAATGGGCTGGCGAGCCACTGCCTGATCGCCATCGCCGTGTTGGCTGCAGTGGCCACTATCTTCATGGTCAGCACCATTGTCCTGTGCACCAAGCTCTCGAGTCAGAAGCACAGGTACCACATGAGAGATATTGACGGCACCGAGCTGGTGTGTATCTCTACGTTGCTTCGCGACCGCAGTAATGGCGACacgaacaaaaacaaatcccgGTTCCCCAAGAGCAACGGCGCCCTCTTGCCGACCACAGACGACAGCGAGGGAGATGACCTCACCCTCCACAGTTTTCTTCCGGAACACACCTGAAAGGTACAGCGTAACCCACCCCTACCCTCTACCACATTGACTCACGTAGGAGCAGAGACATGACTGTTCTTGCGACGCTGTTTGGAAAAAGAATGTCATGCAGACTTTAAAGTAATGCAAAGGTGTCATTTGCTGAAGAGGACAATGTACTTTTCTGTATATTCTGTAAATCTCCGTACTGTGGCTCAGTTTTGTGGCTAAGGGTTGTCATTAAGTCCAAAGTTTAACTTCTGTATGATATAAATTAAGGAAGATCTGGGGGGATCATGAGTCACTCtggaataagaacataagaatataagaaagtgtacaaacgagaggaggccattcgattgtgtccccgggtgcgtgtgtccctgctgatctgtaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaatcaagtccccacttagtctcctctgttccagggtgaaaaggttcaggtccctcagcctctcagtaggacattcccttcagacctggaatgtcattgttgttttatgttcagttacttttttggggggaggggcaATCCTTGAGATAATGATAAGAAAGATATCAGACACAGGGACAGCAGAGTGACAGTATGATACCAGATCAAATCACTCCTTTGCTTTTCTGTGAGGTTTTCCAATCTTAGACAGCCACACATTCGAAATATTTGCTTCCGTAGCATGTAACCAGATTCCTAGGTGCCTTTACATGTGTGTTACACTGACCAACattcaaatcacattttgtattcttaaaacatgtttattttacacttcaGTCAGCATATTTATAAACACCGTAAGTGTTCAAGTTGTCTTCTGTAGCTTGAATTCTGAACTGGAGCTTCATTGAAGTGGCTTCCATTTTACATACTCCAACATTCAGGTAATGGATTTCAGGTAAAGGCCAGAACTCACCAGGCGCCTCGCATCCCCACCAATCAGCAATTGCAGGTCAGTGTGGATTGTCCTGGCTGTGCCCATGTGTAGCAGATGGTACCTCCCACCACAAGCTCCCCAGAGCTGGGACTTCCATTACAACAGGCCCTGCTCATTCCTCACTGAGTAACATTTTCCTCTGGGAGACGCTCCTAAAGAAAAGTGGAATACAGACACACTGGACAATACAGTTGTGTGAATAACTAAACTGTTCAAAGCCATGCACAGACTGATTCAGCGATCGAACATTTACTTAAGTAAATTGAGAGAAGGTGACTGCACACgggaaattaaaaagcaatttcagCTTAAAAACAGTTAATACATCCATAAAATAGTCTcaatcaaatgtaatttcagtTGATTCTGTTCATCAGTGTGTTTTAAACAGGCTTTCCGTGTGTTCGTGGTGTCTACACACATCTGTGCTCTGTTTCTGTTTATCTACTTATCACTGCCATTCCCAAGTGTCCTGCGGTTGTCCGACTCTTGGCTGGAGAATCCTGTGGAAAGATTAGTAAGGCATAGAGGTCGCATATAAACTGTTTGATAAAGATTATGTATAGATGTGTGATTTGGATAGATTTCAACTAAGACAAATTGTATTcatttgcttgtatttttttgtattgcatgtaTACTAGAGACATTAACAGAATAAATGCA

Function

GO: NA

KEGG:

id description
K06544 SELPLG, CD162; selectin P ligand

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018734 True 2885 mRNA 0.47 2 19289189 19296001

Neighbor

gene id symbol gene type direction distance location
AMCG00018737 coro1c,LOC106584990 coding upstream 6223 19274909 ~ 19282966 (+)
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding upstream 66243 19206055 ~ 19222946 (+)
AMCG00018730 svop,svopa,LOC107696058 coding upstream 107461 19165886 ~ 19181728 (+)
AMCG00018724 NA coding upstream 134592 19153458 ~ 19154597 (+)
AMCG00018725 NA coding upstream 172924 19108376 ~ 19116265 (+)
AMCG00018735 NA coding downstream 3947 19299948 ~ 19306740 (+)
AMCG00018739 NA coding downstream 30478 19326479 ~ 19327879 (+)
AMCG00018736 sart3 coding downstream 36489 19332490 ~ 19345758 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 310021 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 316624 19612625 ~ 19636734 (+)
G118013 NA non-coding upstream 558377 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 612963 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1071090 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1308250 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1704077 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 160141 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 171822 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 183690 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 280963 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 698125 19994126 ~ 19994329 (+)
AMCG00018732 NA other upstream 54838 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 380233 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 449094 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 567846 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1306172 17981140 ~ 17983017 (+)
AMCG00018740 NA other downstream 77471 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 675138 19971139 ~ 19974730 (+)
G118557 NA other downstream 963376 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1076218 20372219 ~ 20374812 (+)
G118623 NA other downstream 1218159 20514160 ~ 20514491 (+)

Expression


Co-expression Network