AMCG00018737 (coro1c,LOC106584990)


Basic Information

Item Value
gene id AMCG00018737
gene name coro1c,LOC106584990
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19274909 ~ 19282966 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018737
ACTGGCCGCATTGACAAAGCCTACCCTACAGTATGTGGTCACACAGGTCCGGTATTGGATATTGATTGGTGTCCACACAACGATCAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATGATCCCAGAGAATGGCCTGACGACCCCCCTCTCGGAGCCAGTGGTGGTTCTAGAGGGGCATTCCAAGAGAGTGGGCATCGTGACGTGGCACCCAACTGCCCGCAACGTACTCCTCAGTGCTGGTTGTGACAACATGGTCATTATCTGGAATGTGGGGACAGGAGAGAACATGATCCAGCTAGAGGACATGCATCCGGATGTGATCTTCAGCGTGTGCTGGAACCGGAACGGCAGCCTCATCTGCACGGCCTGCAAGGACAAGAAGATCCGAGTCATCGATCCACGCAAAGAGCAGATTGTTGCTgagaaggagaaggctCATGAAGGAGCTCGCCCAATGAGAGCGATCTTCCTCGCTGATGGCAATGTCTTCACTACAGGTTTCAGCCGAATGAGCGAGCGCCAACTGGCCCTCTGGAACCCGcAAAGCATGGATGAACCGATTTCTGTGCACGAGATGGATACCAGCAATGGAGTTCTCCTTCCCTTCTATGATCCTGACACCAATGTGGGTGACAGCAGCATTCGCTACTTCGAGATCACGGACGAAGCCCCTTTTGTCCATTACCTCAACACCTTCACTACCAAGGAGCCACAGAGGGGCATGGGATACATGCCAAAGAGAGGGCTGGATGTGAACAAGTGTGAGATAGCCAGGTTTTATAAACTTCACGAGCGAAAGTGTGAACCCATCATCATGACTGTACCCAGAAAGGTGAGAGACGACCTGTACCCCGACACAGCGGGGCCGGACTGCGCCCTGGAGGCAGAGGATTGGTTTGACGGCAAGAACGCCGACCCCATCCTCATCTCCCTCAAGCAGGGCTACATTCCCGGCAAGAACCGAGAGCTCAAAGTGGTCAAGAAGAATCTCTTCGACAATAAGCTGAACAAGAAGACGGATCATACAGGCCCCACACACAAGCCGGCCTCTGCTACTCCCTCTATAGTGAGTATTCCAGCCAGCGGGCAGCAAAATGAAGCAAAGTTGGATGAGATCCTTAAAGAAGTCAAATCCCTTAAGGACCTCATCAGCAGTCAAGAGAAGCGAATCACCAAACTAGAAGAGCAAATTTCCAAGATTGCAATCTAA

Function

symbol description
coro1c Enables actin filament binding activity. Involved in several processes, including endosome fission; endosome membrane tubulation; and negative regulation of cell-substrate adhesion. Located in several cellular components, including endosome membrane; lamellipodium; and lateral plasma membrane. Colocalizes with vesicle.

NR:

description
PREDICTED: FK506-binding protein 5-like isoform X1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018737 True 1215 mRNA 0.52 9 19274909 19282966

Neighbor

gene id symbol gene type direction distance location
AMCG00018731 ssh1,LOC106584991,LOC102780175 coding upstream 51963 19206055 ~ 19222946 (+)
AMCG00018730 svop,svopa,LOC107696058 coding upstream 93181 19165886 ~ 19181728 (+)
AMCG00018724 NA coding upstream 120312 19153458 ~ 19154597 (+)
AMCG00018725 NA coding upstream 158644 19108376 ~ 19116265 (+)
AMCG00018719 kctd10,LOC105014907 coding upstream 196132 19073104 ~ 19078777 (+)
AMCG00018734 NA coding downstream 6223 19289189 ~ 19296001 (+)
AMCG00018735 NA coding downstream 16982 19299948 ~ 19306740 (+)
AMCG00018739 NA coding downstream 43513 19326479 ~ 19327879 (+)
AMCG00018736 sart3 coding downstream 49524 19332490 ~ 19345758 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 323056 19606022 ~ 19612141 (+)
G118013 NA non-coding upstream 544097 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 598683 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1056810 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1293970 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1689797 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 173176 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 184857 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 196725 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 293998 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 711160 19994126 ~ 19994329 (+)
AMCG00018732 NA other upstream 40558 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 365953 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 434814 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 553566 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1291892 17981140 ~ 17983017 (+)
AMCG00018740 NA other downstream 90506 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 688173 19971139 ~ 19974730 (+)
G118557 NA other downstream 976411 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 1089253 20372219 ~ 20374812 (+)
G118623 NA other downstream 1231194 20514160 ~ 20514491 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06753621_06757973 CORO1CB, CORO1C, CORO1CA, COR1C coding CI01000339 null 6752018 ~ 6757973 (-)