AMCG00018753


Basic Information

Item Value
gene id AMCG00018753
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19805838 ~ 19851791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018753
ATGGGCTCCCGACTGAGCAGACAGAGTAGTCTGGTGGAAGACGGCACGACATTTTCCAAGAGGAGgcgacagcagcagcagcagcagcagcagcaggacccCGCCGGGGCCGGGAGAGGGGCCAGCCGCGGCGGCGGAGACTTTCTGTTCGCGTCGCTGGTGCTGAAGTCCGACAGGCTGCCGGGGATGCTGCGGAGGGCGAGCCCCAGCCCGTACCTGCGCAGGGTGGGATGGATCCGGGAGATACAGGCGCTTCTCCGGGAATACAAGGTGGAGCAAGCCACCGATGTGCTCAAATTACTGAGAAAGGATTTGGGTTTAGAAGGCACCTCCCTGAACGATATTCTCTACAAGAATGCTGCCTTTCTTAATCTGGTCGACCCTATTTCCCATGAACTGTTACTAAGTCTGGCTCGTGACATTCAGTGCCCTAAGAAGGAGCTGGACCCTGTGAAGTCCTCAGACAAGATCTGCAGACAACTGATCTACCACCTTACCCCCCACTCCAAGTGGCTCCGTCCGAGCATGCCTCGCAGGAAGTCACAAGCATGCTCAGAGAAACTCATCCCCCCGGTGTGCCAGCAGCGCGTGCCAGCAGCGCGCGCCAACCCCAGCCACCCTGGCAGCACTCTGAAAACCACCTTGCAGAAGAAGCTGTCCAACGACTCCGTGGATCTGTCAGGGATCCCGCTGTCGAGCCGAGATGTTCACCGGGTCGCGTACTACCTCCAGAACAACCACGACGCTGTGGCGGCGGTGGACCTGAGCTTCACCGAGCTGCACGACGAAAGCCTCCGTCTCCTGTTGCCCTTCCTGGGTACGCTGCCCAAACTCACCAACCTGGCCCTCAATGGTAACTGCCTGACCCTGGCCATCGTGAAAGACCTCACCGAAGCTATGAAGGACTCCAAGATGTTCTCCAGCCTGGCCTGGATCGACCTGGGCAACAACGTGGACATCTTCACTATGCCCCAACCCCTGCTGGTGGCCCTGCGTAGACGCTGCAGCCTCAAGAGCAGCCTGCCCACCATCTATGAGTACACCGAGGGCCAGCCCTACAACTACCATATGGAGACCTCCATCGAAGAGGCCAGCCACTacgaagaggaggaagaggaggaggaggaggaggggggggaagaGGACAAGCTCGAGCTGGAGCCGTGGGTGATGACGGGGAAGAGTGTCACGCAGAGCTTCACGATGCACTACTGCGAGAGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018753 True 1224 mRNA 0.60 5 19805838 19851791

Neighbor

gene id symbol gene type direction distance location
AMCG00018752 NA coding upstream 33884 19751614 ~ 19771954 (+)
AMCG00018757 NA coding upstream 73063 19729815 ~ 19732775 (+)
AMCG00018751 NA coding upstream 91876 19706575 ~ 19713962 (+)
AMCG00018754 dgcr2 coding upstream 104047 19687584 ~ 19701791 (+)
AMCG00018744 NA coding upstream 121276 19678771 ~ 19684562 (+)
AMCG00018758 NA coding downstream 22537 19874328 ~ 19889731 (+)
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding downstream 107947 19959738 ~ 19966779 (+)
AMCG00018764 tmem120b,LOC107373355 coding downstream 175161 20026952 ~ 20035662 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding downstream 206047 20057838 ~ 20083148 (+)
AMCG00018768 NA coding downstream 243334 20095125 ~ 20097742 (+)
G118304 NA non-coding upstream 226807 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 325882 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 332378 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 348855 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 1129612 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 142335 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 427497 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 450879 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 525497 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 587169 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 323746 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 571487 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 896882 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 965743 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 1084495 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 119348 19971139 ~ 19974730 (+)
G118557 NA other downstream 407586 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 520428 20372219 ~ 20374812 (+)
G118623 NA other downstream 662369 20514160 ~ 20514491 (+)
G118635 NA other downstream 740945 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_05471449_05512831 LRRC75B misc CI01000053 null 5471449 ~ 5513074 (+)
eurasian perch (Perca fluviatilis) G190933 NA non-coding NC_053130.1 CM020927.1 702364 ~ 702873 (-)