AMCG00018754 (dgcr2)


Basic Information

Item Value
gene id AMCG00018754
gene name dgcr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19687584 ~ 19701791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018754
ttttttttacgaacCAGGAATACAGACTGTAGTGtgaagagggagaagggggaTTGGTATTGTGATTGCATACTACATATCCATATATCTAGAGAAATATACAACGTGCATGTGAACCCGAAGCCCTCGCCGCTTCTTATCCACACAACCTTCATGGGGAATTGAGCAACGGGGAGCTCAAGGGTTTGCATTCTCGtcggtttattttatttctgtgtcgGGTATGATGATGAATGGAGGATAAATGTTGCCCAAAGCTGACAGCAGCAGTTTCgcccttctcctctctcttctcttcgcCCTGACTTTGACAGACCCTCCACGGACAGgtcCACGGCTAGCTCTGGCACGATTGTTGTCAGAGATGCGGTGCAGCCAAGGCCAGTTTGCCTGCCGCAGTGGAAAGTTGCAGTGTATCCCCCTGTCTTGGCAGTGCGACGGCTGGACGGCTTGTGAAGACAAGAGCGATGAAACGGACTGTCCTACTGTGAATAAGGATGAGCGATTCCACTACGGCAATGCCTACGACAACGTAGAGGACATCATTGGTGTGGCTCAGCCAGTGCGCTTCAACAAGAAGTGTCCCACTGGCTGGCATCACTATGAGAAGACCGCCAGTTGTTACAAGGTTTACCTGAACAACGAGAACTACTGGCAGGCGGTGGAGACATGCCAGAGAGTCAATGGCTCCCTGGCCACCTTCGTCACGAACGAGGAGCTGCAGTTCATTCTGAAGATAGAGGTGGATTTCGACGAGAAAGTGTGCGAACGGAAGGACCAATGCAAattttgGGTTGGCTACCAGTATGTCATCACTAACCAGAACCATTCTCTCGAAGGACGCTGGGAAGTTGCATATAAAGGTTCCATGCAGGTGTTTTTACCCCCTGAAGGATTAACGAGTTTTGGGGAGGCAATGCCAAATCAGGAGAATGTTTTTTGCGCACAGCTACAGCGATTCCAAATCAAAACCATGAACGAACGAGGCCTGCACAGCTGGCATGCAGAGAACTGCTACAAGAAATTCCCTTTCCTCTGTAAAAGAAGGCAGACGTGTGTGGACATCAAGGACAACGTGGTGAATGAGGGCTACTACTTCACCCCCAAGGGCGACGACCCCTGCCTGAGCTGCACGTGTCACAATGGCGAGCCGGAGATGTGCGTGGCGGCACTGTGCGAGCGACCACAAGGCTGCCAGCACTTCCGCAAGGACCCCAAGGAGTGCTGCAAGTTCACCTGCCTTGACCCAGATGGGAGCAGCCTGTTCGACTCCATGGCCAGTGGGATGCGTCTGATCGTGAGCTGCATCTCCTCCTTCCTCATCCTCTCCCTGCTGCTCTTCATGGTTCACCGGCTGCGGCAGCGGCGCAGGGAGCGCATCGAGACGCTCATTGGGGGCAACTTGCATCACTTCAACCTGGGCAGAAGGGTGCCCGGTTTTGACTACGGCCCCGATGCGTTTGGCACTGGCCTGACTCCACTACATCTGTCAGACGATGGGGAGGGAGGGGCCTTTCATTTCCATGAGCCTCCCCCTCCATATGCAGCTTTCAAGTACCCAGATATACATCACCCGGATGACCCCCCGCCACCCTATGAAGCCTCCATCAATCCAGACACTATTCTCTACGTTGATCTAGGAGAGAACATTTCTCCAACCAATGAGAACACTCAGCCACCATTAGAAACCACTAATCTCCACCAGCAGGCGAGCGAGGAGGCCTCAACGTTAGAACACTCCTCAGAGGAGCACGAAGACTCCATTGACAGCAGCACACTTTTGGTTCCCCCCGACTCACCCAGCGACGAGACCACCATGACACAGACTGCAGTTACCAGCTGCCCCAtaTATTTTTGGAACTGTAAGTCATTCAGATCGCTTAAAAATTAG

Function

symbol description
dgcr2 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in adaxial cell; polster; and retina. Orthologous to human DGCR2 (DiGeorge syndrome critical region gene 2).

NR:

description
PREDICTED: integral membrane protein DGCR2/IDD isoform X1

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018754 True 1891 mRNA 0.52 12 19687584 19701791

Neighbor

gene id symbol gene type direction distance location
AMCG00018744 NA coding upstream 3022 19678771 ~ 19684562 (+)
AMCG00018745 NA coding upstream 9645 19676622 ~ 19677939 (+)
AMCG00018746 NA coding upstream 50850 19612625 ~ 19636734 (+)
AMCG00018743 rnf185,LOC102783490 coding upstream 75443 19606022 ~ 19612141 (+)
AMCG00018736 sart3 coding upstream 341826 19332490 ~ 19345758 (+)
AMCG00018751 NA coding downstream 4784 19706575 ~ 19713962 (+)
AMCG00018757 NA coding downstream 28024 19729815 ~ 19732775 (+)
AMCG00018752 NA coding downstream 49823 19751614 ~ 19771954 (+)
AMCG00018753 NA coding downstream 104047 19805838 ~ 19851791 (+)
AMCG00018758 NA coding downstream 172537 19874328 ~ 19889731 (+)
G118304 NA non-coding upstream 108553 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 207628 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 214124 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 230601 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 1011358 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 292335 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 577497 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 600879 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 675497 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 737169 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 205492 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 453233 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 778628 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 847489 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 966241 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 269348 19971139 ~ 19974730 (+)
G118557 NA other downstream 557586 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 670428 20372219 ~ 20374812 (+)
G118623 NA other downstream 812369 20514160 ~ 20514491 (+)
G118635 NA other downstream 890945 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003042 dgcr2 coding NC_007121.7 CM002894.2 42044220 ~ 42087230 (-)
grasscarp (Ctenopharyngodon idella) CI01000158_00694202_00704844 IDD, DGCR2 coding CI01000158 null 693923 ~ 704844 (-)