AMCG00018759 (orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888)


Basic Information

Item Value
gene id AMCG00018759
gene name orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19959738 ~ 19966779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018759
ATGAGTCTGAACGAGCACTCGCTGCAGGCGCTGTCCTGGAGGAAGCTGTATCTCAGCAGAGCCAAGCTGAAGGCTTCGAGCAGGACGTCAGCTCTTCTCTCGGGTTTCGCAATGGTGGCTATGGTGGAGGTCCAGCTGGAGCCAACCCATGAATACCCCCCCGGCCTGCTGATTGCCTTCAGTGCCTGCACCACCGTGCTGGTAGCGGTCCACCTCTTCGCCCTGATGATCAGCACCTGCATCCTGCCCAACATCGAGGCAGTGAGCAATGTGCACAACCTCAACTCTGTCAACGAATCGCCACACGAGCGCATGCACCGGCACATCGAGCTGGCCTGGGCCTTCTCCACCGTCATTGGAACTCTGCTGTTCCTGGCCGAGGTGGTGTTGCTGTGCTGGGTCAAGTTTCTCCCAGTCAAGAGACACCCCGTCTCCCCGGCCAATCCAAACATCACAGAGTCCATCAGCCCGGGGCAAGCGGCTGCCATCGCCTCCACATCCATCATGGTGCCCTTTGGCTTGATATTCATTGTTTTCGCGGTGCATTTCTACAGATCACTGGTCAGCCACAAAACAGACCGGCAGTTCCAGGAACTGGAGGAACTTTCCAATTTCGCCAGACTCCAGAATCAATTGGACAATAGAGGAGATGTTACAATGCAGTCTCCAAGCTCTCATTTTccatag

Function

symbol description
orai1 Enables identical protein binding activity and store-operated calcium channel activity. Involved in calcium ion transport; positive regulation of adenylate cyclase activity; and positive regulation of calcium ion transport. Located in cytosol and plasma membrane raft. Is integral component of plasma membrane. Implicated in immunodeficiency 9 and tubular aggregate myopathy 2.

NR:

description
PREDICTED: calcium release-activated calcium channel protein 1-like

GO: NA

KEGG:

id description
K16056 ORAI1; calcium release-activated calcium channel protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018759 True 687 mRNA 0.56 2 19959738 19966779

Neighbor

gene id symbol gene type direction distance location
AMCG00018758 NA coding upstream 70007 19874328 ~ 19889731 (+)
AMCG00018753 NA coding upstream 107947 19805838 ~ 19851791 (+)
AMCG00018752 NA coding upstream 187784 19751614 ~ 19771954 (+)
AMCG00018757 NA coding upstream 226963 19729815 ~ 19732775 (+)
AMCG00018751 NA coding upstream 245776 19706575 ~ 19713962 (+)
AMCG00018764 tmem120b,LOC107373355 coding downstream 60173 20026952 ~ 20035662 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding downstream 91059 20057838 ~ 20083148 (+)
AMCG00018768 NA coding downstream 128346 20095125 ~ 20097742 (+)
AMCG00018769 NA coding downstream 132284 20099063 ~ 20111187 (+)
AMCG00018767 NA coding downstream 145124 20111903 ~ 20119142 (+)
G118304 NA non-coding upstream 380707 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 479782 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 486278 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 502755 19456142 ~ 19456983 (+)
G118043 LOC104945943 non-coding upstream 1283512 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 27347 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 312509 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 335891 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 410509 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 472181 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 477646 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 725387 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1050782 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1119643 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 1238395 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 4360 19971139 ~ 19974730 (+)
G118557 NA other downstream 292598 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 405440 20372219 ~ 20374812 (+)
G118623 NA other downstream 547381 20514160 ~ 20514491 (+)
G118635 NA other downstream 625957 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002415 orai1b coding NC_007121.7 CM002894.2 41914084 ~ 41921417 (+)
grasscarp (Ctenopharyngodon idella) CI01000053_05593016_05597420 ORAI1, ORAI1A coding CI01000053 null 5593016 ~ 5597488 (+)
rainbow trout (Oncorhynchus mykiss) LOC110525563 LOC106585507 misc NC_048570.1 CM023224.2 23911741 ~ 23914297 (+)