AMCG00018767


Basic Information

Item Value
gene id AMCG00018767
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20111903 ~ 20119142 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018767
CCTCCCCATAAAGCCCTGTATTGAGTGTTTGCATTGTGTCTGAACTGCCGGCgagctttaaaaatattatccAACAGCAGCAATGTCGGGCAGGTCGGTCCGCGCCGAGACCAGGAGCCGAGCGAAAGATGACATCAAGCGGGTTATGGCCGCTATTGAGAAAGTACGAAAATGGGAGAAAAAATGGGTGACTGTAGGAGACACCTCCCTTCGAATTTACAAATGGGTTCCTGTGACTGAGCCCAAGACTGATGACAAGGGCAAGAATAAGAAGAAAGGCAAGGATGAGAAATGCGGCTCAGAGGTGACCACCCCGGAAAACAGCTCCTCCCCAGGGATGATGGACATGCACGATGACAACAGCAACCAGAGCTCCATCGCTGACGCCTCCCCCGTGAAGCAGGAGAACAGCAGCAGTGCCAGCCCCGCCCCCGAGCCCATGGCGGTCTCCCAGGGCGACAGTAACGAGGCCAAGTCTGATCAGAGCAAGTCCCCCGAGAAGGAGCTGCCTGGCCCAGAAACCAAGATGGGCAAGAATCCCCATTTGACGGAGAACTCTGTGGCCAGCCCTGACAAGACGGAAGCACAGCCTTCAGGAGAGAAGGAGCCGCCCTCAGATTCTGCCAAAGCTACTCAGGAATCCGAAGACGGGGCCCCACCTTCCAAGAAAGTAAAAACAGAGTTGTCCCAGCAGGACTTCGAGGAGAGTTAAGGCGTCGACTGTGTTTCTGCTCGTTCCTGTCCCTCCCCCTGCGAGGCGCACAGAGAGTGTGTCTCTGAGGATCCCGTTGCTCTGCACATCCACTCCTGCTGGCCAAGGGCAACCCGGCCCCGACCTCCCCTCACCCTCTTCGGGCACAAGCCCTTGCCACATCACCATCTGACAGACTGGCCcgccaacaacaaaaaacaacaacaaaaacactgaagaacTGCACCTGTGAAACACACCACGGCGACCCTGTAAAGGACTTCTCAATGTTcacttttgtttggtttctttctttttttattttcttttttgttttggtttggtctgTGTGAAAAGGGTTGGTTTTCTCAGGAGGGTCTACGCACTGTTTCTAAATGTCAAGATAACCGATGTTTCTGCtgctgtattattgttattatatttgttattattaatagtaagatttccttattttaacaacaactacaataaCTATTTAATGAATGGTACAGGTCATgtttttagctttttatttttcttcatgtgAAGGCCGTAGCTTGTAGCCTAGGTCCTGCTTCGTCACGTGCCTTGTGTTACCAAAACATTGATAAGctctttttttctgtacttttacaCAAGtgtcctgtttttaatttgctcaaCTTGTAAACCATTGTAATACGTATGCTGTAGCAGAAatggtttattacatttttttaaatattttatttatttaaaaaaaaaaaccattttGTTTCCAATTGAGCCATTTCCAGGCTTTGGCGATAAATCTCAAATGATACTACGCATTATGATGCAGGTCATAACTGCAAtagcaaagcaaaaaaactaaaacaacctTAACCTAAATGTAACTTTTCTCAATGTGAAATTATTGTTACGATTTAGCATTCCTGGTTAAAATGTATTGCCGGCACAGAGGAAGAAAATCTTTAGTAGAGGATTCTATTACCGGTCCTGGTGCTTGTATCTGATGTGGAAGTGTTGAATCTTCGTCCAGTGAATTTCATCATAGCGGTTATCTCCACAGTAACACCAATAGTACATTTAACGAGAACAAACTACTATGCTGGATATGTCATAATAGTTTCATAATAGGTGCTAGGCTTAAGAATTGCagaggatttttattttctttaatataaaatgtcaatactttgttttccattacagTACTGGATATTTACTTGAGCTgttagggttttttttttttttttgtatctgtataTTTGGATTTTGAATATTAGTTTTGGTTTTGACACATTATATAGGGAACATTCCACTTTTAGTTGTATACacccattaaaaaacaaccacaacaatgaaacaaagcatGTAACACAATGTACATTCTCTAATCACAGAAGCAGCATAATTGAAACTGTAGGTGACATGATTGCATATAATCTCCGTTTTACACCGTTCATATCTGGCCCTTTGTCTCTAGTGAAAGGGTTGTTGTAGAGTGGCTATGTGGAACCTCTGCACAACACTGAAATCCTTCAGTCGTTTTCTGGTACTGTGGACTCTGTGACAGTGTGGTGCTGTATAGCTTCACAGTGGCTTTTATTTAGCACTGTCAACACAAATGAAGACTACAGCAGATTCCTTGACCGGTTTGCGTGTTTCGTTTGTTTTCTTGAGGAAATCTTAATCCATTTTAAAGGCATTACATAATACCAAGGATTAGACAGCACTACAGTTTTGCACATGTGTGAGAAAACTTATTAGTTAACGGTTGATAGTTAACGGTAGATGGACTCTGATGATGTGAATtactttttcctgtttttttgttgttgttgtcgtcgtcTTTGACAGATTTCAGAGACACTTTGTGCACAGGTATGTGGCTTCATGTTGCTCGAGAGAAGCCTAAGGTGCCTCAAAAGGACTTTCAAAGTCGGTTCCTGACAGtacaaaacctttttatttaactttattttgggTTATTTCTGTACAGTCCCTAGGGTGCTTTGTTAATGCTGACAGCTACAGCTTTCTATTgtgttaagaaatatatattataatttgtaaaaaataaataaaatcaaaaaattACTGGACTGTGATGCAAGTTTAGAACcaccaaaaatatattcaactACAAAGACTATAATATCagtgaaaggttttttttttttttttttttggttgggtTTCTGTGTGAAAACTGgatcaatgtttttctttaaacaaacaacacaacagcagtCCTTGAGTTTAAATCCTTTTGTTCACCTATGTTACAATTGGTAATTGTCAGGATGGTTCTGCAAATACCTCAGTCACAGTCCAGAAGTGCTGGCACTTAGACTTAATGTATTGACTAGAAATCACGCAAATATCTCTGCTTGAAATCACATACATAGGATTTTTCATTTTACCAATGATGTTGTTGAAGCATCTTCTCTATATCAAGTTTGGCTATTACCTTCAGTTGTTTACCTTCTAAAACTGAACCCATAGcaagttgtaaaaaaaaaaatatatatatatatataattttttttgggaccattttttcccccctccacCTTCAATAGTATTGTGTGTTGTAGCAGTTTGATTTGGTTTGAGTTATTTATTCCATCAGTAGTTATTGGTTTTATCATGTACaatgaat

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018767 True 3338 mRNA 0.40 6 20111903 20119142

Neighbor

gene id symbol gene type direction distance location
AMCG00018769 NA coding upstream 716 20099063 ~ 20111187 (+)
AMCG00018768 NA coding upstream 14161 20095125 ~ 20097742 (+)
AMCG00018763 setd1ba,LOC107689149,LOC107658592 coding upstream 28755 20057838 ~ 20083148 (+)
AMCG00018764 tmem120b,LOC107373355 coding upstream 76241 20026952 ~ 20035662 (+)
AMCG00018759 orai1,LOC106585507,LOC108232614,LOC106568227,LOC105014888 coding upstream 145124 19959738 ~ 19966779 (+)
AMCG00018770 mlxip,LOC107702943 coding downstream 2067 20121209 ~ 20151726 (+)
AMCG00018773 NA coding downstream 70448 20189590 ~ 20197104 (+)
AMCG00018772 NA coding downstream 83286 20202428 ~ 20207454 (+)
AMCG00018774 NA coding downstream 192016 20311158 ~ 20312556 (+)
AMCG00018775 NA coding downstream 203276 20322418 ~ 20348942 (+)
G118410 NA non-coding upstream 117574 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 532872 19576964 ~ 19579031 (+)
G118291 NA non-coding upstream 631947 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 638443 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 654920 19456142 ~ 19456983 (+)
G118566 NA non-coding downstream 160146 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 183528 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 258146 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 319818 20438960 ~ 20443229 (+)
G118618 NA non-coding downstream 371719 20490861 ~ 20491106 (+)
AMCG00018762 NA other upstream 137173 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 629811 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 877552 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 1202947 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 1271808 18827597 ~ 18840095 (+)
G118557 NA other downstream 140235 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 253077 20372219 ~ 20374812 (+)
G118623 NA other downstream 395018 20514160 ~ 20514491 (+)
G118635 NA other downstream 473594 20592736 ~ 20593016 (+)
G118636 NA other downstream 474224 20593366 ~ 20594139 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location