AMCG00018792 (LOC106928543)


Basic Information

Item Value
gene id AMCG00018792
gene name LOC106928543
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20601956 ~ 20603315 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018792
ATCAACACgtcaaaatacaacaaactgTTCTTTTATGAGCCCAGGCCATACTGTCAAACTCTTTTAAAATTAGTGTCTGggaatgtatttgtgtgtgtgatatacTGAGGGACCGGAGTGCCAGGCTGCTGCTTCTATGCCGTCACCTCCGCTGTTTCGCCTGCTCTGGAGCTTGTCCAAGACCCTGACTTTGGGAGCCTGCTGTCCTGGACGGTTGCCGTTGTGTGGCAGACCGATGACATGGCCCCATATTCCCAGCGCCGGGAAGAAGGACTCTCTGGATCTGCCTTCGGTCAATGAAGAGGAACTGGAGGAGCAGTTTGTGAGGGGACATGGTCCAGGGGGACAAGCAACCAACAAAACCAGCAACTGCGTGGTACTGAAACACATCCCATCGGGCATCGTTGTGAAGTGTCACCAAACTAGGTCAGTGGAGATCAACAGAAAGCGAGCCCGGCAGATAATGCAGGAGAAGCTGGACGTTTTCTACAAAGGTGAAGATAGTGACATTTTGAAGcagaggaaagagggagagtggAAAAAgcaagagaagaggagaaaggCCAGGGATATTCTGGAGAGGAAGAAACGCTTCAAGGAAGGCCTGCAGGCTGACTCAGACACGGGAGGGGAGGCTGGGACATGA
>TU148663
GCAAGGAGGTCGGGTCAAAGTTCAGGGGGTATCAGGAACAGGAGGCTGGGTAGCGATCAACACgtcaaaatacaacaaactgTTCTTTTATGAGCCCAGGCCATACTGTCAAACTCTTTTAAAATTAGTGTCTGggaatgtatttgtgtgtgtgatatacTGAGGGACCGGAGTGCCAGGCTGCTGCTTCTATGCCGTCACCTCCGCTGTTTCGCCTGCTCTGGAGCTTGTCCAAGACCCTGACTTTGGGAGCCTGCTGTCCTGGACGGTTGCCGTTGTGTGGCAGACCGATGACATGGCCCCATATTCCCAGCGCCGGGAAGAAGGACTCTCTGGATCTGCCTTCGGTCAATGAAGAGGAACTGGAGGAGCAGTTTGTGAGGGGACATGGTCCAGGGGGACAAGCAACCAACAAAACCAGCAACTGCGTGGTACTGAAACACATCCCATCGGGCATCGTTGTGAAGGTCAGTGGAGATCAACAGAAAGCGAGCCCGGCAGATAATGCAGGAGAAGCTGGACGTTTTCTACAAAGGTGAAGATAGTGACATTTTGAAGcagaggaaagagggagagtggAAAAAgcaagagaagaggagaaaggCCAGGGATATTCTGGAGAGGAAGAAACGCTTCAAGGAAGGCCTGCAGGCTGACTCAGACACGGGAGGGGAGGCTGGGACATGAAGACGCCACTGTCTGAATAGACTTCTGAATAAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018792 False 646 mRNA 0.51 3 20602011 20603279
TU148663 True 723 TUCP 0.52 3 20601956 20603315

Neighbor

gene id symbol gene type direction distance location
AMCG00018782 arl6ip4 coding upstream 117027 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 138607 20457965 ~ 20463349 (+)
AMCG00018783 NA coding upstream 168301 20408073 ~ 20433655 (+)
AMCG00018784 NA coding upstream 203619 20383129 ~ 20398337 (+)
AMCG00018775 NA coding upstream 253014 20322418 ~ 20348942 (+)
AMCG00018793 kmt5a coding downstream 27688 20631003 ~ 20637704 (+)
AMCG00018791 snrnp35,LOC102792111 coding downstream 39014 20642329 ~ 20645241 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding downstream 67521 20670836 ~ 20678821 (+)
AMCG00018804 NA coding downstream 92367 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 94907 20698222 ~ 20705953 (+)
G118641 NA non-coding upstream 1600 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 3838 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 4349 20597101 ~ 20597607 (+)
G118638 NA non-coding upstream 5264 20596468 ~ 20596692 (+)
G118637 NA non-coding upstream 6376 20595173 ~ 20595580 (+)
G118645 NA non-coding downstream 1389 20604704 ~ 20606097 (+)
G118644 NA non-coding downstream 4333 20607648 ~ 20620547 (+)
G118771 NA non-coding downstream 319053 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 767595 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 1078005 21681320 ~ 21681723 (+)
G118636 NA other upstream 7817 20593366 ~ 20594139 (+)
G118635 NA other upstream 8940 20592736 ~ 20593016 (+)
G118623 NA other upstream 87465 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 227144 20372219 ~ 20374812 (+)
G118557 NA other upstream 341016 20259377 ~ 20260940 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 75965 20679280 ~ 20695194 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 120295 20723610 ~ 20772586 (+)
G118815 NA other downstream 584641 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1245055 21848370 ~ 21897700 (+)
G119507 NA other downstream 4630767 25234082 ~ 25267781 (+)

Expression


Co-expression Network