AMCG00018793 (kmt5a)


Basic Information

Item Value
gene id AMCG00018793
gene name kmt5a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20631003 ~ 20637704 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018793
ATGGCAAAAGGAAAGAACAAACCCCCGACCCCTAGCAAAGGCAAACCCGAAGTCGGTGCTCAGACCAcagaagaaaaagggaaaaaagaaaacaagcccGAAATGAACGGGgacattatttttaatgcccAGCCCTCAATACGCTGTTTCTTGAGCCCGAACAAACCACGCTCTCCTCTTCATGACGAGAACTCCATCACACACATTCAGGATGGGAAGTGTCCAGGAAAACGTACTCTACAGATGGAAACCCAGAAGCAGGAGGAAGAGAAGCAGAACGGTATGAACGCGGGAGGTGGTGTTGCCAAGTCTGAAGAGAATGAGGCAACCCGGCGTGATCCATCAGAGACCGATCTATCAAAACGACTAGATTTTGAAGCTGCTTATTTACACTCCACTGCAGACTTGACTCCAGACAGCAATGGTGCTGACAAAGCCCACGTGAAAAACGAAACTCGGCGCAAGGTCAAAGTGAAAAAGTCAACAGCAAGAACAGCGGACAATAAAAACTCCCAAAACCGAAAAGTCACTGACTATTTCCCTGTAAGAAGAAGCTCTAGGAAAAGCAAAGCAGAATTGAAGTGTgaggaaaagaaacacattgaCGAATTAATAAAGAGTGGAATCGAAGAAGGAATGGAGGTTCAGCACATCGAAGGAAAAGGCAGAGGAGTGTTTGCCTCCAAATGTTTCCGGAAAGGCCAGTTTGTGGTTGAATATCATGGAGACCTTCTACAGATTACAGATGCTAAAAAGAGAGAAGCTATGTATGCACAGGACCCCTCAACTGGCTGCTACATGTATTACTTCCAGTATCTCACCAAAACCTACTGTGTGGACGCGACAAAGGAAACCAGTCGTCTCGGAAGACTCATAAACCACAGTAAAAATGGGAACTGTCAAACCAAACTCCATGACATTAATGGAATACCTCACCTAATACTCGTGGCCTCCAGGGACATAGACGAAGGGGAGGAGCTGCTTTATGACTACGGTGACCGGAGCAAAGCCTCCATTGCAGCTCACCCCTGGCTAAAGCAATGAtgaaccttttctttttttcttgcaaatatGTACAATGAAGGGAATATTCTACAAATTTTACTTAAGGAttagaaatcattttaaatactagAAATTGCCTTAGCagctgagagtgtgtgtgtgtgtgtgtgactggaggaggggaggtgggggacaATTTAAAAGATGTCGAGGCAATCTTTAAATGTGTCCCAGATcgatactttttatatatataaatctagaTGTTGATGCTagatttcaaagcattttgtatattttgtatacaggTAGGTCAGTGCTTCCAAAGCATGCAGGTGTAGTACAGGActtatgcatttttatacaaattcTTATTCTATATTCTGGTAGTTATGAGACTAGACTGGCATATGCTTAGCAATAATTTATGGTACCAGAAGGTTTCGGGTTGTTACAAAATAGCTAAGGTATGCATACGTgtcctatatatatttaaaaagaaactggaATGTGATTCCTGTCATTAAACTTGcaagttttttttagttttgccaTGATGCGTGTAGTCATTTTAAGAACTTGAAGAAATTCTGTACCTCTAACACACAGCTATTAAATGTTCACAACCAAATGCTTCAtgtgaaagtatttaaataaatctctaTGCTGGTTTAA

Function

symbol description
kmt5a Enables histone-lysine N-methyltransferase activity; p53 binding activity; and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II; peptidyl-lysine monomethylation; and regulation of DNA damage response, signal transduction by p53 class mediator. Located in cytosol and nucleoplasm.

NR:

description
N-lysine methyltransferase KMT5A isoform X1

GO: NA

KEGG:

id description
K11428 SETD8; [histone H4]-lysine20 N-methyltransferase SETD8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018793 True 1680 mRNA 0.41 8 20631003 20637704

Neighbor

gene id symbol gene type direction distance location
AMCG00018782 arl6ip4 coding upstream 146074 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 167654 20457965 ~ 20463349 (+)
AMCG00018783 NA coding upstream 197348 20408073 ~ 20433655 (+)
AMCG00018784 NA coding upstream 232666 20383129 ~ 20398337 (+)
AMCG00018775 NA coding upstream 282061 20322418 ~ 20348942 (+)
AMCG00018791 snrnp35,LOC102792111 coding downstream 4625 20642329 ~ 20645241 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding downstream 33132 20670836 ~ 20678821 (+)
AMCG00018804 NA coding downstream 57978 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 60518 20698222 ~ 20705953 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding downstream 68793 20706497 ~ 20723114 (+)
G118644 NA non-coding upstream 10456 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 24906 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 30647 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 32885 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 33396 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 284664 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 733206 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 1043616 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1909568 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1920509 22558213 ~ 22558419 (+)
AMCG00018792 LOC106928543 other upstream 27688 20601956 ~ 20603315 (+)
G118636 NA other upstream 36864 20593366 ~ 20594139 (+)
G118635 NA other upstream 37987 20592736 ~ 20593016 (+)
G118623 NA other upstream 116512 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 256191 20372219 ~ 20374812 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 41576 20679280 ~ 20695194 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 85906 20723610 ~ 20772586 (+)
G118815 NA other downstream 550252 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1210666 21848370 ~ 21897700 (+)
G119507 NA other downstream 4596378 25234082 ~ 25267781 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000177_00102706_00108651 KMT5A coding CI01000177 null 102088 ~ 108651 (-)
mexican tetra (Astyanax mexicanus) G172691 kmt5a,LOC108425183 non-coding NC_035916.1 CM008319.1 1657138 ~ 1661820 (-)