AMCG00018799 (tmed2,LOC105026094,LOC108425203)


Basic Information

Item Value
gene id AMCG00018799
gene name tmed2,LOC105026094,LOC108425203
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20670836 ~ 20678821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018799
CACGTCCACCTGCTGGAAATAGGGATTTTCCGAACGCGTACAGCAGCAAGACCGTACACGCAGTTTGTCCCTCGCAGCGCCTCGTTTTTTTCTTTACGTGGCAGTGCTAGCCGAGCTCCCCGTCTCCCCTCCTTCAGTCGCCGCACCGACACAAACTCCACCTCCGCGGTGCCTGGCTGGGGTTCACTGGGCGCTTTGGTGCTTCTGTTTCTCTCCGCTGTTCGCCTTCTTCCGGTTTGCAGACATCCATTACATTTATaccaataatacaaatataaccatccataaAGATGTTTACGTTGTCGGAGATCCTTGTCCTCGTAGCCATCTTCTCCGCCACGGCCTCCGGCTACTTCGTCAGCATAGACGCGCACGCCGAGGAGTGCTTCTTTGAACGGGTCAACTCCGGCACCAAGATGGGCCTTATGTTCGAGGTGGCCGAAGGAGGCTTCCTGGACATCGACGTGGAGATTACAGGACCCGATGGTAAACAGATTTATAAAGGAGACAGGGAGTCCAGTGGGAAATACTCTGTTGCAGCCCACATGGATGGCACTTACAAATTTTGCTTCAGCAACAAGATGTCCACTATGACCCCTAAGATTGTGATGTTCACCATCGACATTGGAGAGGCGCCAAAAGGGCAGGACATGGAGACGGAAGGTGGTGGGGATACCTGGGATGCTCACCAGAACAAGCTGGAAGAGATGATCAATGAGCTGGCTGTGGCCATGACTGCGGTCAAGCATGAGCAGGAGTACATGGAAGTGCGCGAGAGAATACATAGAGCAATTAATGACAACACGAACAGCAGGGTGGTGCTTTGGTCATTCTTTGAAGCTCTGGTGCTTGTAGCCATGACCCTTGGACAAATTTACTACCTGAAGAGGTTTTTCGAAGTGCGGAGAGTCGTGTAAAACAGCAGATTTCTGGCACTTTTCACCATTTACCAAAATCGTTTAGTCACAACATTTACTCCAAGATTGGGATTCTGACTTTTAGACTTTTGAAAAGCCTTtcaattcagcttttttttttttttttcctttgggaAATCTTTGGGTGGTTAATTTTGTGTTCctccccattttatttttaatatttttccacCTCTGTGTAATTTATGATTTTCCAACcacttgctttttaaaaaagaaaaaaagaaaaaaaaaaaaaggcaaggtCATGTTAACATTGAAGCTGTTCAGCTCGTTGGCAGATACAAACCTGTAGAGTTTGGAGAAGGCTATTTATTAGGTTTTAAACTTGCaaggttttaattttgattttgcGGCATCCAAAATGGTGAAGACAGGCCTGCCGCAACCAACAGCTCTTCTCTCTTGTTTGCAAACTACAGGTATTAAATGGGTTTGAAGAGGAATACATCTGGAGGgaaacaatcattaaaatacacctaGCTTGCCTGATTTATTTTCTGGTCTAGATCACGTCAGACTGGAATCAGTGCTGGACTCTAATGGCTACAATGAAAATTGCAACTTGATAATATACAGTaactgctttctttttctttttcttttctttttttaatgtcaatgACTCATGAGTCGAGACTGCTGTGTGGTCACAAGCtaattaattatctttatttccTTTGATAAGTGACCTTGTGGAAAGGATCTTAGCCGTTCTTTGATGTAAACAGACACAATTTGAATTCCCACCGTccctttcatatttcatattggtCCAAGGAAGTCTATTTCTTTCCACATTCAAGGCACATAGAGAATGTTTCTGTCTGGGGACAGGGTGGGGTGGAAGGGAGGTTGGGgggtctttttttccccagtatCTTAATGATGGGTTTAACACATAAAGTACATATTAGTTCAAAGGTGTGGGTGTGGATCAGGATAATGTTGTGACTGGTGTAAATTAGTtgcttgtattattttttttgtctaaaagaaaaaaaaaaaatcctttacaaATGGCAACACAATTTTGTACAATTAATTTCCTATTTGTTACAGGTATTCATGTTCCAGGTAAACATTTTGTTACTTTGGGGGAAATGGAGGTGGCAGCAGTCTGTGAATTAGGCCAGATGACTGCTGCCTGCcattacagaaatatttttgtGTAACAGCTGACACCtcagatttgaaatgtaaagatgtaaagtaaaaacaaaatgctgatgTATGTCAAATATGACCCAGGTttagtaaataataaacacaacattctttaaaactgcctgttcagatttatttatttttgcgtaATGCAATGTCTTCCTCAAAGTGCCTGTTTGCCAGGGATCAAGGAGtgggagaagtgactgagaCCACAATACTTAAATGAGTGATTCCCTTGCCCTGCCCTGGATAATGCCAATATGTACACCTAAAGCACATAGAAtggtccctccctccctcctgcagGAAACCCCACGAGATGTATTCTAGTTATATAAGTGTTATGTAAGATGTGCTGTTCTAGTTGTACAACTTAAAGAAGGGGTTGAGATACTGAGGTTTTTGCTTTTTGATCCTGAATGAATTTTACCCACCcttgtcaatttgtttttacatatgtaaataattgCAATAAAGCAGTTTTTCT

Function

symbol description
tmed2 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018799 True 2595 mRNA 0.42 5 20670836 20678821

Neighbor

gene id symbol gene type direction distance location
AMCG00018791 snrnp35,LOC102792111 coding upstream 25595 20642329 ~ 20645241 (+)
AMCG00018793 kmt5a coding upstream 33132 20631003 ~ 20637704 (+)
AMCG00018782 arl6ip4 coding upstream 185907 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 207487 20457965 ~ 20463349 (+)
AMCG00018783 NA coding upstream 237181 20408073 ~ 20433655 (+)
AMCG00018804 NA coding downstream 16861 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 19401 20698222 ~ 20705953 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding downstream 27676 20706497 ~ 20723114 (+)
AMCG00018806 rflna,LOC106585519 coding downstream 218093 20896914 ~ 20912077 (+)
AMCG00018823 NA coding downstream 1012490 21691311 ~ 21692108 (+)
G118644 NA non-coding upstream 50289 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 64739 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 70480 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 72718 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 73229 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 243547 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 692089 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 1002499 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1868451 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1879392 22558213 ~ 22558419 (+)
AMCG00018792 LOC106928543 other upstream 67521 20601956 ~ 20603315 (+)
G118636 NA other upstream 76697 20593366 ~ 20594139 (+)
G118635 NA other upstream 77820 20592736 ~ 20593016 (+)
G118623 NA other upstream 156345 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 296024 20372219 ~ 20374812 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 459 20679280 ~ 20695194 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 44789 20723610 ~ 20772586 (+)
G118815 NA other downstream 509135 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1169549 21848370 ~ 21897700 (+)
G119507 NA other downstream 4555261 25234082 ~ 25267781 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000168_01162239_01166570 TMED2.L, TMED2 coding CI01000168 null 1162239 ~ 1166960 (+)