AMCG00018801 (atp6v0a2,LOC106580324,LOC106584979)


Basic Information

Item Value
gene id AMCG00018801
gene name atp6v0a2,LOC106580324,LOC106584979
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20706497 ~ 20723114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018801
TCAGCATAGAGACGGTCTCGAACTGGAAACGACGTGGAAGGAATCTGTCATAAAACACCGAGGAACCTGATCTATCCCTGTACTGTGTGCTCATATAATGAGCTGTAATCGAGGATGTAGTTACTTCATGTGTCTTAACATCACCTTTCGATTTTGTGGCTGTCATtgttaaatttgaataaatcaaCACTCGACGCTTCATCCATTGTTACATCCAggatttcagattatttttttactgaactTCAACAACGACTTCGTTTTTAATTCCGCTGCGAATTTGCGCAACAATCTTATACAAGACGAAGAAACAACACACCATCCTGTTGTTACACGACCAATGCGGTCACGTTACTAATTTTGAATGAAAAAGCTAACCTGGTACTAGTCTTGTATGTTCCTGGAAAGCCCTAAGGATCTACGTGTCACAGTTTAATGATTGACAGGAGCGCCGGAGGAATTGACTTCTAAAGGTCCTACTTGAAGAGTCACCTGGATGTGAATCAGTGTCCTCACCCCGGGGTGAAGATGGGCTCGTTGTTCAGGAGCGAGGAGATGTGCTTGGCCCAGCTGTTCCTGCAGTCCGGGTCTGCGTATGACTGCATCAGCGAGCTGGGGGAGATGGGGCTGGTCGAGTTCAGGGATCTCAACCCCAATGTGAACTCCTTCCAACGCAAGTTTGTCGGTGAGATAAAGAGGTGTGAGGAGATGGAGAGGATTCTTGGCTACCTGCTGAGAGAAATTAAGAAAGCAGACATTCCTCTTCCCGAAGGGGAGGTGAACCCAGTTGCGCCTCTGCCCAAACACGTCTTGGTCATCATGGAGCAGTTGCAGAAGCTGGAGGTAGAGTTAAGCGAAGTGACCAAAAACAAGGAGAAACTAAAGAAAAATCTCTTGGAGTTGACTGAATACACCCACATGCTGAGAATTACCAGGAACTTTGTCCAGAGAAGCACAGAGcaGGAGCCTCTTCAGCCACAGTATGAAGAATTCCCTTTCCTGGAGAAAGAATCCTTAATGGACTATAACAACATGCAGCGCCTGGGAGCCAAGCTTGGGTTCATCTCAGGCTTAATACACAGAGTTAAGATTGAAGCCTTCGAAAGAATGCTGTGGAGGGTGTGTAAGGGATACACCATTCTAAGCTACGCGGAGATCGATGAAAACATTGAGGATCCTGATACCggagaaataacaaaaagtgTGGTATTCTTAATTTCATACTGGGGCGAACAGATTGGTCAGAAGGTAAAGAAGATATGTGATTGTTATCACTGTCACATCTACCCATATCCCAGCAACAACGAGGAGCGGAAAGATGTCGTTGAAGGACTCCGGACTCGAATTCAAGATCTGCACACTGTGTTGCACAGGACAGAAGATTACCTGAGACAGGTGCTAAGTAAAGCTTCTGAGTCCATTTATACATGGGTGATCCAGGTCAAAAAGATGAAGGCCATTTACCACATACTGAATCTGTGCAGCTTCGATGTGACCAACAAGTGTCTGATCGCGGAGGTGTGGTGCCCAGTGAACGACCTGACCACGCTGCGCCGAGCTTTGGAGGAGGGATCGaggAAGAATGGAGCCACTGTGCCATCTTTTGTGAATCGAATACCGAGCACAGAGACCCCCCCGACGCTCATCAGAACGAACAAATTCACGTCGGGCTTCCAGAACATTGTGGAAGCCTATGGAGTTGGCAACTACAGAGAAGTCAATCCAGCTCCCTACACCATTGTCACGTTTCCCTTTGTGTTCGCTGTGATGTTCGGAGACTTGGGCCACGGCATCATAATGGCTCTCTTCTCATTGTGGATGGTCTTATTTGAAAACAACCCCAAACTCAAGAGAACAAGAAACGAGATATGGAACACTTTCTTTGAGGGTCGATACATAATCTTAATGATGGGCATCTTCTCTGTGTACACGGGACTCATCTACAATGACTGCTTTTCCAAGTCTGTAAATATCTTTGGCTCTGCGTGGAATGTGAATGCGATGTTCAAAGCAGGACAATGGAAtgccAGCGATCTCCATTCAAATGCCTTGCTAACCCTTGATCCCAATGTAACTGGTGTCTTCAATGGACCATACCCATTTGGCATAGACCCTATTTGGAATTTGGCGACTAATCGCCTCAGTTTCTTAAACTCCTACAAGATGAAGATGTCTGTCATCCTGGGGGTTGTTCACATGACCTTTGGAGTCATTCTGGGTGTCTTCAATTACCTGCACTTCAGAAAGAAGTTCAACATCTACCTGGTGTTTTTACCCGAGCTGCTCTTTCTGCTCTGTCTCTTCGGCTACCTGGTGTTCATGATCATCTTTAAATGGCTGGCTTTCTCAGCAGAGAACTCCCGACTCGCTCCCAGCATCCTCATCCACTTCATTAACATGTTCCTCTTCCAGGGGAATGAGGGCATGCAACCCCTCTATCCTGGCCAGACAGGGCTGCAGGTGTTCCTCGTGGTGATCGCTGTCCTCTCGGTGCCCGTGCTGCTGCTAGGGAAACCTCTTTACCTGTACTGGCTGCACCATGGAGGGAAGAGCCTGGGCATGTACAGAAAGGGGTACGAACTGGTGCGCCGGGGTAGTGAGGAGGAGCTGTCTCTGCTCAGAGCTCATGACATGGAAGAGGGGGGGAGCCACACAGATCACACAGCCAGCAGGGAGGCCCAGTCTGAGGAGtttGATTTTGCAGACGTTTTCTTGCACCAGTCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACTGCTTCCTACCTGCGCCTCTGGGCCCTCAGCCTCGCCCACGCCCAGTTGTCTGAGGTCCTGTGGGCGATGGTGATGAGAGTGGGGCTGCGCGTGGACAACAAGTTTGGGATTGTCTTCCTGGTGCCAGTGTTTGGGCTCTTCGCCGTCCTCACCGTGTCCATCCTGCTCATCATGGAGGGGCTCTCCGCCTTCCTGCACGCCCTGCGGCTGCACTGGGTGGAATTTCAGAACAAGTTCTACACTGGCGCTGGAATCAAGTTCATCCCTTTCTCCTTCTCACTCATCTCCTCTGGTTTCGAATACGAGGGCTTCATGTGAAAAGGCTGCTCAGAGCTAAAGAACTGGGAGAAACCCTGTGTGACGGGGATTGTATGATCTTGAACCTCATAGctgtccattttttttctttttttgtatatttggttttgtacttaaatgttttttttgcacTGACTGCCTTACATAAAGCAAccaaatataaacatatcaTGTTTGATTGTAAATGTCCAGATACAACCTTAGAATCTGTATAGTGTTTCAACACACATTTGcttaaatgttttggtttccaCCGTTAATTGTGAAGAGGTgcttaactgtatattttattaattctggTTGTCAGCGGagaaggggttgggggggtgtaAGCTATTTGCATAAAGGGTTACTGTGAAGTATTTGATACAATGTGTGCATCCCAGCAACCACTGACAGTCTGcttgttttaaaactgaaaatattaatatatattttttgattcaCAAAAGcccagaaatgtaatttatatagtCTAGgaataaatggtttattattCTAAAAATCTGTCTTTCTTACAAGTTAATTGGTGATTACTGACAGATGGCATTCATAGAGTGGTACAGGACCTCTTTTCCCagatatatttgaatgtaaatactgtattgtattagaTTCTGTATGTAGATGTTGGAATAGTGTCATATGTTGCTGTAGCCACTTTTTCTGAAATCTTTCTGGCACTTTGCAGTATTTGAATGCTACAACAGAAGCACAGATGAAGCTTCCCTAGGAAATCATGTTCTGAAAACATGAGAGAGCTGCTTGTTACATGTCAATCCAATGTCAAGGCCAATATCAAGTTAATAAGTACTACCACTAATTTTGTCAGGAATTCTAAATGAACATATTCCCTAGTGGGAAAAGCATGTCACAAGTGGAGAGAAATAACATAGAATGGTGCAATTGCATGACCATGCTGTGGATTACAAGACTCTGGCTAAACCTATTGAGCAATGCAGATCCAGCTGACATTTTCAGAACCCTGAAAGGGACTGGCAGATTGAACCCAGTCCTTTAGCTGAAACTCAACATCAGGACCAGCGGACTACACAAACTGCAGCCCATTTCAGAACTGAGAAAGTGAGACACCTTTTTACACAAGGGGTTGTGGGTGTCTCTTGCCAACTGCTACGTGGTGTTGTGTAACTTTCTATAAAGGCTCATTCCAGAGTCTTCGTGGTTTTCTTGCATCACTAACCTGCTTACAAACTGCTAACAAACATCTTGTGCAGGAAGATGTGTTCTTTctaatctttgttttttgttcttatatGGTTGAGTTAACACCAGAATCCTTATGCTTCTAGCTTTTGCGCAACTTCttttattcacttttatttattttaacaaaggaatattttattaaacattaccTTCCTTGAGTAATGTACTGTGCTGAAGattgcaaatgcaaaatatttttacaaacaaaatgccTAGCTGAAgtctagtttattttttcaccccCAGAAAAAGTTGAGTTGGCTGAAGTGCTTCTAGGTATAAAGAAATGTCTTGTTTTATCCTGTTCTAATACATTGTGCCCAATTTAAGCAGTTGTAAGTTCTGGCACACTCCAATGACCTCCCCCCcaacaaatgtgtaatttaagtttttcattCAGCCCATCTTTTCAACTGccatttcaaaaagcaaataaagtcttaataatttgaaatggaaGTGCAAACGTCTcattgtttcaattaaatagCTGCTTTCGTGTGTTTGGGTTTTAGGACATCACAGAACTAAAACGGATGCATGTTCTGGAcccttacaaaaacaaatcctggtGTCCTGCAGGAATTGCGCCGATGTCCTGTAGTTATTCTTGGTGTCCTGCAGGAGTTCTACTCGAGTCCTgaaagaaattacaaaaaa

Function

symbol description
atp6v0a2 Predicted to enable ATPase binding activity. Involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Located in lysosomal membrane. Implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome.

NR:

description
PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 2-like isoform X1

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018801 True 4971 mRNA 0.44 20 20706497 20723114

Neighbor

gene id symbol gene type direction distance location
AMCG00018803 NA coding upstream 544 20698222 ~ 20705953 (+)
AMCG00018804 NA coding upstream 8605 20695682 ~ 20697892 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding upstream 27676 20670836 ~ 20678821 (+)
AMCG00018791 snrnp35,LOC102792111 coding upstream 61256 20642329 ~ 20645241 (+)
AMCG00018793 kmt5a coding upstream 68793 20631003 ~ 20637704 (+)
AMCG00018806 rflna,LOC106585519 coding downstream 173800 20896914 ~ 20912077 (+)
AMCG00018823 NA coding downstream 968197 21691311 ~ 21692108 (+)
AMCG00018821 NA coding downstream 992736 21715850 ~ 21743739 (+)
AMCG00018826 NA coding downstream 1307086 22030200 ~ 22036605 (+)
AMCG00018825 NA coding downstream 1324188 22047302 ~ 22074621 (+)
G118644 NA non-coding upstream 85950 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 100400 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 106141 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 108379 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 108890 20597101 ~ 20597607 (+)
G118771 NA non-coding downstream 199254 20922368 ~ 20931404 (+)
G118863 NA non-coding downstream 647796 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 958206 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1824158 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1835099 22558213 ~ 22558419 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 11303 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 103182 20601956 ~ 20603315 (+)
G118636 NA other upstream 112358 20593366 ~ 20594139 (+)
G118635 NA other upstream 113481 20592736 ~ 20593016 (+)
G118623 NA other upstream 192006 20514160 ~ 20514491 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 496 20723610 ~ 20772586 (+)
G118815 NA other downstream 464842 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 1125256 21848370 ~ 21897700 (+)
G119507 NA other downstream 4510968 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 4742977 25466091 ~ 25485446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_07735779_07751747 TCIRG1A coding CI01000049 null 7735779 ~ 7751747 (+)