AMCG00018838 (derl3,derl2,LOC107667536,LOC107602852,LOC105014174)


Basic Information

Item Value
gene id AMCG00018838
gene name derl3,derl2,LOC107667536,LOC107602852,LOC105014174
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22630545 ~ 22636051 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018838
ATGGCCCACAGTTTCATGCAAGAATACCTTCAGATCCCCGCCGTCACCAGGACCTACACCACCGCCTGCGTTTTAACCACAACTGCAGTGcaaCTGGAATTCATCACTCCTTTTCAGCTGTACTTCAACCCCGATCTGATTTTTAAAAGATACCAGATATGGCGACTGATTACCAACTTCCTCTTTTTCGGCCCCCTCGGATTCAGTTTCTTGTTCAATATGATCTTTCTGTATCCTTTATATCGTTATTGTCGAATGCTGGAGGAGGGCTCTTTCCGGGGCAGGACAGCTGACTTTGTCTTCATGTTCCTCTTTGGGGGAGTGCTCATGACAGTATCCTTTTCCAGACACTGGGGGACCCATGTTTTCATGGCCAGTTTAAATCTTCTGACTTCAGTCCTGTTTTTCCTGGGCCAGGCTTTCACCATCATGCTGGTTTACGTGTGGAGCCGTCGGAACCCGTACGTTCGCATGAACTTTTTTGGCCTTCTCAACTTCCAGGCCCCTTTCCTGCCCTGGGTGCTTATGGGTTTCTCTTTGTTGCTAGGCAACTCCATTGTCATTGACCTTCTAGGTATTGGTGTTGGACACGTATACTACTTCTTAGAAGATGTTTTCCCAAACCAACCAGGAGGGAGAAAACTGCTGGGGACTCCAGGGCTGCTGAAAGTAATTTTTGATGCCCCTGAGGAGGATCCCAACTACAGCCCACTGCCTGAGGACCCAGTGGGGGAGCCTGGCCAAGAAGGATGGGGTGAGGGAGAGCACAGGCCGGGCCACGAGGATCAAGAGCCCCCAGAAGACCCCCAGGATCAAAATGCACAGCAGCGATAG

Function

symbol description
derl2 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL2 (derlin 2).
derl3 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL3 (derlin 3).

NR:

description
PREDICTED: derlin-2-like

GO: NA

KEGG:

id description
K13989 DERL2_3; Derlin-2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018838 True 834 mRNA 0.50 7 22630545 22636051

Neighbor

gene id symbol gene type direction distance location
AMCG00018836 NA coding upstream 3047 22604351 ~ 22627498 (+)
AMCG00018832 crkl,LOC106566436,LOC106563168 coding upstream 170128 22455239 ~ 22460417 (+)
AMCG00018833 NA coding upstream 181216 22440803 ~ 22449329 (+)
AMCG00018834 NA coding upstream 207731 22401501 ~ 22422814 (+)
AMCG00018827 NA coding upstream 492252 22115610 ~ 22138293 (+)
AMCG00018837 NA coding downstream 15088 22651139 ~ 22659793 (+)
AMCG00018847 NA coding downstream 48826 22684877 ~ 22692816 (+)
AMCG00018845 NA coding downstream 75641 22711692 ~ 22719425 (+)
AMCG00018848 NA coding downstream 94677 22730728 ~ 22742264 (+)
AMCG00018849 NA coding downstream 107958 22744009 ~ 22752505 (+)
G119016 NA non-coding upstream 51209 22579051 ~ 22579336 (+)
G119015 LOC106927871,LOC103148411 non-coding upstream 52832 22577501 ~ 22577713 (+)
G119014 NA non-coding upstream 53585 22576722 ~ 22576960 (+)
G119013 NA non-coding upstream 54855 22575459 ~ 22575690 (+)
G119010 NA non-coding upstream 62565 22567766 ~ 22567980 (+)
G119071 NA non-coding downstream 30841 22666892 ~ 22667141 (+)
G119100 LOC106566253 non-coding downstream 129500 22765551 ~ 22861808 (+)
G119177 NA non-coding downstream 343220 22979271 ~ 22982799 (+)
G119178 NA non-coding downstream 358925 22994976 ~ 22995190 (+)
G119231 NA non-coding downstream 458515 23094566 ~ 23108600 (+)
AMCG00018820 NA other upstream 732845 21848370 ~ 21897700 (+)
G118815 NA other upstream 1441299 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1857959 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1935351 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 2027230 20601956 ~ 20603315 (+)
G119507 NA other downstream 2598031 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2830040 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3042626 25678677 ~ 25718426 (+)
G119762 NA other downstream 3824569 26460620 ~ 26461227 (+)

Expression


Co-expression Network