G116214


Basic Information

Item Value
gene id G116214
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10120177 ~ 10121558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145548
TgcccattcatattttttttcccccaacactGAAAAAGCCACTCTGAGATTTCtgggtttttgtttaaaaaaaaaaaaaaaggctgctATGTATACAGTAAGGAAAACCATATGCACAGCAAACCACagtcaaagcaaagcaaaactgcaCCCGGCGATCTTTAACCAAGACATTCCCTCCTGCTCACAGAAATGGTTCAGTCCTTAAGGCTTTTCAGATTAGCTCCACAGGAAGGAAGCAGCGATTGTAAACAAGGACAACTGTAGATTTTTAAAGTcctttgctttatatttttttgtacattgtatAAATTTTACatgctacagtacagtaaggGTAGAATgttatttaccattttaaattccttatacatgtataaaataagCAAACTATACCCATTTAAATTTCATAGTGCAGTTCTGAACTATGAtgtggaagttttttttttttttaattttattattttttaaatcacttttctaTTGGTTTTCCTGATACAGGACCttttttatagaaaacaaaacaacaactgatagtacagttcaaaataaattcacagTATCATTTTCTTCTGAAGCTAGAAACTtaactggattaaaaaaaaaaagcaatacatctaTTTCCATAAAATACATGAGAAAAACATGATGCAAGATTTAATGTTGATATTAATTTGCTGTCATTGAGACATAACTGACAATCTATTTCTTCATTTGTCAGTGAGGTTGATGGAATATTAGtctgcagagaaaaaaacaaaaacattctcaAGTCCTCTTAGCTTAAAAATAACGGTGCAGCAGACACAGTGACCCGTGTGGCGTCCATCAGTGGATGTGGTGACATCTGGATTGATGCATGACCGCTTACATTTTGATTCTTAATATGAGACATACCGAAAATGTTGATACTTCAGCACAAAAGACTAGTCTTCccaatcattcattcattaattcattcattcagtctttgttttgtttcagttgttggTTTTTCTGGGGGTCCCCCCCTCCAGGGATTTGCACtcgaagaagaaaaaaaaagtcacatttatacacaagtaAGAAACAAGTCCTGAGTCTTTAGTTGAGCAGCAGCTGAGATGTTAAGATACAGGGCttcttctttatttcattaaatatatttaaattctacatttttttagATTCCCAAGTGTTTTAGTTTCCACCACtgaagagtaaaataaaataaaacaaatccacagataaaaagttaaaaaacaagaagttaaaaaagaaaagaaaacaaaatctgtggtaaaaatacagtattccCAATGATTAAAGCACCACTTCCAGTATCCAGTATGATCTTCTCTTGTACATGGAAATATTATTTTGGGATGGCTTCTGCAATATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145548 True 1382 lncRNA 0.33 1 10120177 10121558

Neighbor

gene id symbol gene type direction distance location
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding upstream 123 10100924 ~ 10120054 (+)
AMCG00018415 NA coding upstream 25533 10089422 ~ 10094644 (+)
AMCG00018407 NA coding upstream 94687 10015946 ~ 10025490 (+)
AMCG00018396 NA coding upstream 151772 9960221 ~ 9968405 (+)
AMCG00018397 polr3e,LOC106589521 coding upstream 176876 9926956 ~ 9943301 (+)
AMCG00018413 NA coding downstream 16422 10137980 ~ 10150773 (+)
AMCG00018414 pms2 coding downstream 29407 10150965 ~ 10159643 (+)
AMCG00018411 NA coding downstream 38906 10160464 ~ 10174296 (+)
AMCG00018425 NA coding downstream 177445 10299003 ~ 10299554 (+)
AMCG00018423 bri3 coding downstream 211963 10333521 ~ 10342424 (+)
G116199 NA non-coding upstream 78344 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 372790 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 501272 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 506396 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 541080 9578837 ~ 9579097 (+)
G116264 NA non-coding downstream 93829 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 223177 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 229406 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 234414 10355972 ~ 10357357 (+)
G116303 NA non-coding downstream 238124 10359682 ~ 10359903 (+)
AMCG00018406 NA other upstream 73654 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 107504 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 507259 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 555613 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 606941 9512314 ~ 9513236 (+)
AMCG00018422 NA other downstream 136247 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1130801 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1844689 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2367909 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2381465 12503023 ~ 12520331 (+)

Expression


Co-expression Network