G116601


Basic Information

Item Value
gene id G116601
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12126450 ~ 12126699 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146048
ctTTCTCCAGTGTGCTCAGGGGACTCACCTGGGTGTGTAGACCGTGTTCAGATGGGTTCTGCTGCCCTGACAGGTGGAGCTGAGGGAGATCGAGTCATCATGGTAGCAGCAGGTGCGGTCAAGGGCTCGCAGGTGCAGCAGTTCATCTGAGCGGCTGAAGGCCGGGTTATCCAGGGAGTCCACAGAGGAACCGGGCCACGACTGGGTCCAGAACCGGCCTGAGAGATCGTCAAAGCGGCTGAACCGACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146048 True 250 lncRNA 0.61 1 12126450 12126699

Neighbor

gene id symbol gene type direction distance location
AMCG00018478 tnrc6a,LOC107601257 coding upstream 9622 12073105 ~ 12116828 (+)
AMCG00018475 NA coding upstream 139396 11967889 ~ 11987054 (+)
AMCG00018476 NA coding upstream 160120 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 226203 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 309402 11755834 ~ 11817048 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 24690 12151389 ~ 12163807 (+)
AMCG00018481 NA coding downstream 59991 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 68843 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 108312 12235011 ~ 12270627 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 167278 12293977 ~ 12312814 (+)
G116546 NA non-coding upstream 308361 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 710712 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 714380 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 1042661 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 1146765 10977022 ~ 10979685 (+)
G116603 NA non-coding downstream 12303 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 145890 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 151731 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 160870 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 573802 12700501 ~ 12700765 (+)
G116585 rbbp6,LOC107689611 other upstream 155672 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 870285 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1834189 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2079927 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2113777 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 362768 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 376324 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 416846 12543545 ~ 12611879 (+)
G116832 NA other downstream 1126644 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1181199 13307898 ~ 13346877 (+)

Expression


Co-expression Network