G116603


Basic Information

Item Value
gene id G116603
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12139002 ~ 12142135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146052
gttttttttgtttttttctctctccaaacGCATTACAAGCtttagacattttttattttcttttatttttaaatacaatgtgtacAGCAGATAGCGAAGTTGACACAGGAAAGCCaggaacaacaaaaaacagtttcTGAAAACATTGAGTGACTGAAAAACACCACCTGTGACAGGTCCTCGGGGTCATGGGGGCTTCACGTCTGCCACCCCCTTGTAGCGCTGTGCCTCTCTTTACTCGTACACGTCCTTCTTGTCAGCGATGTACTGTACGATCTCCTGAGGAGTCATTAGCTTCTCTGCCTCAACGTCTGGGATCTCAAAGCCTGT
>TU146053
gttttttttgtttttttctctctccaaacGCATTACAAGCtttagacattttttattttcttttatttttaaatacaatgtgtacAGCAGATAGCGAAGTTGACACAGGAAAGCCaggaacaacaaaaaacagtttcTGAAAACATTGAGTGACTGAAAAACACCACCTGTGACAGGTCCTCGGGGTCATGGGGGCTTCACGTCTGCCACCCCCTTGTAGCGCTGTGCCTCTCTTTACTCGTACACGTCCTTCTTGTCAGCGATGTACTGTACGATCTCCTGAGGAGTCATTAGCTTCTCTGCCTCAACGTCTGGGATCTCAAAGCCAATTCATCTTCCATGGCCATAATAATCTCCACCTGGTCCAGGCTGTCTAACCCAAGGTCTTTCATGAAGTGGGAAGATACTGACAGTTCTCTGGGTTGATCTTGTCATACAGCTTCAGGACATATAGGACCCGCTCCTTTATGGAGTCCAACGTGAGAGGAGGCAGATCACCATACTGTCGACACAGCTGGACCAGGGAGCTGGAGCTGTGTCTGGGCGACCGGCCGTGCTCTCTGGCTGCATGCGAGGAGGGAGAAGGGTCGCCGAGATGGAAGCGGCACCACGGCAGCCCTAAGAGCAAGGCTGCCCGTACACAGGCTCCCAGAGGATCGGCCGAGCGAGCGGACACACCGAGCTAGGACACGGGACGCCATGATTGAGAACCCAGATCAATCCCACCATGCAACAcgaatgaaaagagaaaaagcgCTGGAGTTG

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0045333 cellular respiration biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU146052 False 330 lncRNA 0.43 2 12139002 12140081
TU146053 True 765 lncRNA 0.50 5 12139002 12142135

Neighbor

gene id symbol gene type direction distance location
AMCG00018478 tnrc6a,LOC107601257 coding upstream 22174 12073105 ~ 12116828 (+)
AMCG00018475 NA coding upstream 151948 11967889 ~ 11987054 (+)
AMCG00018476 NA coding upstream 172672 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 238755 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 321954 11755834 ~ 11817048 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 9254 12151389 ~ 12163807 (+)
AMCG00018481 NA coding downstream 44555 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 53407 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 92876 12235011 ~ 12270627 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 151842 12293977 ~ 12312814 (+)
G116601 NA non-coding upstream 12303 12126450 ~ 12126699 (+)
G116546 NA non-coding upstream 320913 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 723264 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 726932 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 1055213 11061569 ~ 11083789 (+)
G116653 NA non-coding downstream 130454 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 136295 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 145434 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 558366 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 737451 12879586 ~ 12883914 (+)
G116585 rbbp6,LOC107689611 other upstream 168224 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 882837 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1846741 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2092479 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2126329 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 347332 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 360888 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 401410 12543545 ~ 12611879 (+)
G116832 NA other downstream 1111208 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1165763 13307898 ~ 13346877 (+)

Expression


Co-expression Network