G116653


Basic Information

Item Value
gene id G116653
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12272589 ~ 12273496 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146113
CTGAGCGGCTGGCTGCTAGGCACGTTAATGCATTGTGTTTCTCGTAAAGTCGGTCGGCTTcaataacatttcagttttgttttttctttagtgaTATCTGACACTACTTGTATCTGAGGAGTCTGTTGATGAAATGGGAAAGGAACGCTATGAGCAGGGGCTGAGTTAATGCATTTTGCCTTCACAACACCTTGTTACAAGCAGGCCTTGGGTGTCGGAGGTTCTGCTGTTTCTCAGGCTGACTGAATATCTCAATTTACCTCTGTATTTGATGGGTGGAAAGATGTCagattgatacaaaatatgaaaagttgCCCTTGATTCCATGCCTCATTAGATTCCATACATTGTTTAGGCTAAAAGGGAAGTGTTCAATTTCTACCATTAGCTAACTAATTAGACTAGTTAGTAATCTGAGGAGCTCAGTCGGCACAAAAACCAGAGCCGGGCCTGGCCTCTGAGGAAACGAGTGGGAGACCCCAGCATTGTGGGGTTGCACAACTCCAGAGCTAATTAGAGCCAACAGGAAGGGAAGCTCTTTAAAAGTCGGGAGCGTAACAGGGAGAACACAGGAGAGTGCAAATCTGCATAACCCATTATTAACTGCATATCCCGATCCCTGGGAGGGGAACTCTAACTGAAATCATGAGCTAGATGGGGTGTTTCTGTGCCAGTAAAGCGCTGGCAGTCTGTGATTAGTGTGGGGTGGAcctgccacaggttgacaaaaGGAGGACAGGCTGGCGTGAGGGTGGGGACAGGTGGGGAGCACTCACTCGGTAACGGTTTTGGAGGATTTCTCTCTCTTGAAGGCCAGCTGGTACTTGAGGCTCTCCACCTCCTTCTTCATCTGGGGCAGGTCCATCTCGTCCATGGTGGCAGCTGGGAGTTGGGGGGCTCACTGCAGC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146113 True 908 lncRNA 0.48 1 12272589 12273496

Neighbor

gene id symbol gene type direction distance location
AMCG00018483 NA coding upstream 1962 12235011 ~ 12270627 (+)
AMCG00018482 plk1,LOC102776063 coding upstream 70493 12195542 ~ 12202096 (+)
AMCG00018481 NA coding upstream 85261 12186690 ~ 12187328 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 108782 12151389 ~ 12163807 (+)
AMCG00018478 tnrc6a,LOC107601257 coding upstream 155761 12073105 ~ 12116828 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 20481 12293977 ~ 12312814 (+)
AMCG00018492 NA coding downstream 257062 12530558 ~ 12539267 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 345864 12619360 ~ 12648880 (+)
AMCG00018500 NA coding downstream 440611 12714107 ~ 12738068 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 511195 12784691 ~ 12819143 (+)
G116603 NA non-coding upstream 130454 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 145890 12126450 ~ 12126699 (+)
G116546 NA non-coding upstream 454500 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 856851 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 860519 11410805 ~ 11412070 (+)
G116654 NA non-coding downstream 4934 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 14073 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 427005 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 606090 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 631604 12905100 ~ 12958552 (+)
G116585 rbbp6,LOC107689611 other upstream 301811 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1016424 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1980328 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2226066 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2259916 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 215971 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 229527 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 270049 12543545 ~ 12611879 (+)
G116832 NA other downstream 979847 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1034402 13307898 ~ 13346877 (+)

Expression


Co-expression Network