G117130


Basic Information

Item Value
gene id G117130
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14242864 ~ 14244203 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146733
CAAGAATATGCCCCCCCACTGAGAGACAAAGAGGTTCCTGAGAGAACAGGGAGTATAGTCCCACACAGCCATGTtcaatggaaatacattttactgcttTTGTTCGCAAAAACACCAAAGCCAAGaaccagagaggagagagaataattaatcaatcaaccaataaattatgaaaatgctcAATAGAACAACCGATAAACCAACggaatgtaaatgttttacagcAGTCGCTCTCTTCCTGCTCAGATAGATGGACGACAGCAATACAAAACTCACTTTCATGTACACACATTCACTGAACTCAGTGTCAGTTAATCAATAATCTTACAAATAATCATGAGTAATAACTCAGGCATTAACAaatggactggactgctgcagagtcactgactggactggactgtgcaGTGTTGTGCTATAGCGCAGTGTTGTGCAATAGAGTGCTGTGCAGTTTTGAGCaattgtgcagtgttgtgttatAGTGCATGTAGTCTGGGTCGTTGGGCAGGAGGAGTGTGCTGTACAGGACAGATTGTCCCAGTCCAGAGAGTCCAGTGCAGAATAAACACTCCCCAGTCAGTCCACTGGAGACATGGTCCACAGAGAAGCTATCCTTGGAAACTACGGGAGATACCATCCACAACAGTCCACAGTTCACTAAAGACAGTATCCACGGAGTCCCACAGTCCACTAGAGACAATGTCTGCAGAGTTCCACAGTCCACTAGAGGCAGTGTCCACAGTGCACAGAGTGCCTGAGTCTCTCCGGCAGGTGCAGAGGGGCCAGGCTGTGCCCCACTGTCGGCACAGCTGCTGTTCAGCAGAATATCACAGCTGCTGAAATAGGCGACCCAATGTGCCTGAGAAGAAAACAGTGCCCCCTACAGACAGGGCACAAGACCAGTGACAGCAGagctcagaacaggtccctgtCTGTGGGTGGGGGTTTGGCCAGTGTGGCTCCGTCACAGTGGAAAGAATCacgcaacaaaacaaacaagtcctGATCCCAGCCAATATACCATACACTATGCCCTCctggggacagagagggacagaatgAGAGACAGTAATACAGTGAAACAGACTGACAAtgtgacagacagagagacacacagatagGGAAATAGAGAGCCTGCCCCTTCCCCTCCAtcactgtccctctgtctgtctgtctgtctgctccctctatccctcccccctccctccctcgctcgcTCATCGCCCAGGGCTGAAGATGTAGTCCAGGGCTTGTCTCTCAGCTGCCGCTACGTTGGGGTGCCACAGGTCCACCATGAAGACCACTCGAGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146733 True 1312 lncRNA 0.50 2 14242864 14244203

Neighbor

gene id symbol gene type direction distance location
AMCG00018550 NA coding upstream 4915 14232722 ~ 14237949 (+)
AMCG00018552 LOC108412053,LOC101077666 coding upstream 10550 14230990 ~ 14232314 (+)
AMCG00018549 NA coding upstream 42520 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 81126 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 130954 14111704 ~ 14111910 (+)
AMCG00018558 NA coding downstream 116833 14361036 ~ 14367961 (+)
AMCG00018568 NA coding downstream 144823 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 148106 14392309 ~ 14393844 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 160203 14404406 ~ 14406978 (+)
AMCG00018565 sppl3 coding downstream 176072 14420275 ~ 14431626 (+)
G116976 NA non-coding upstream 395772 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 402893 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 551497 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 875836 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 1027512 13129738 ~ 13215352 (+)
G117131 NA non-coding downstream 505 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 193789 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 289760 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 491893 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 539303 14783506 ~ 14784333 (+)
AMCG00018551 NA other upstream 147 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 51787 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 96869 14141377 ~ 14145995 (+)
G117033 NA other upstream 193711 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 220058 13997909 ~ 14022806 (+)
AMCG00018564 mlec,LOC106579938 other downstream 86638 14330841 ~ 14399539 (+)
G117178 NA other downstream 100887 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 164755 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 529912 14774115 ~ 14777110 (+)
G117383 NA other downstream 542420 14786623 ~ 14788133 (+)

Expression


Co-expression Network