G117380


Basic Information

Item Value
gene id G117380
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14855079 ~ 14899918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147080
ttaaaaacaaagctgggacatcaaatataaatgttacttGGCCAAGAGAACCTGATGTGCTGCAAACTGGGCATTTGTAAATTACCCCAACTGTTCCAGGTTAAAGCACTTAGGCAAGGCGGCACATTTTTCAGGAATGCTTCAATTTTATTGAACTGAAAAGTTTAcaaagggattaaaaaaaaaagaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaacacccccatAAAACACAAGATGAATTTGACAGTAAAAGAGATACAGAATGACCTGGCTTGCtccaaaagaaacattttaaaaagagagagagagagagagagagagagagagagagagctggtcAGAAAAGGCAGCATACAGACATAACCTGGGTCTCCAGAGAGAACATTTGTGTATTAAGGCTGTTCAGCCATGctggcactggcactggcactggGTTGACTTGGCATGGGGAAATACACAGAAGAGAAGTGGGGAGAAAAAGATaagaaatacaaactaaaatcCCCCtaaccaccccccctcccttgAGGAAAACGAAAAAAACTGGTGATACCTTGTGAAAATATGTCAGTTTACTCACTCTGCGGTGTAtgtttacaattaaaaacaagtctTAAAGATAGGTAGTGTTAACAGCGTTTCGTGTCTGCGCTCGAAGGTGCAGCCGCTGCAGTGTCTGGCCTGGCACAGAGCTGCTCTACCCCCATTGGCTTTTGCTTCAGTCAGTTCTTCTATAAATTCATAGTTTCCCCAAGACAAGacagttcaaaataaaaacaaatgctttttgtaaACAAGTTCTCGACAGCGCTGCATCTGTGCCCTGCCCTCAATCACTCTGCCCTGCGTAAAATGTCTCCTTTTATACTGTGCATAAATTACAACACACACCATGTTTTCGTGTTGTTTCTTTACATGATGTTTGAAGGCATCCCAAAGTGAGTCGTGCATATAGATTCCTCTAATTTGACAGGCATTAACAGGAATAAAACTCTAAACATGCTTGAgtaaaatgcaaagaaagatGAACAAAAGTAGGAAGAAAATCCCAAAACGACTTAAGTCATCAGACCTTGTGCTAGAGATTTAACACCACATTCCGTTTCATTTCAGCAGTaaccttaaataaatatcagcGCCAGTGTTCAACGCACGTGTGACAGACTGTCTGGCTTTTACCCCACTTTCCcacaaacagcaaaaacaatccACACAGGCTTCGTTCGAAAGACCCAGTGCTTCGGTTACGGTTCGCCGTGATTTCTCTAGATCAGCACTTCTAcgttaattaaatacataggTTCTCTGAAAAACCAACTAACAAAATAACGCCATCAGGAAACAGTGAGGGATGCCTtagaaattgattaaaaaaaatacatatatacaaaaaagtgTCTCAAGATAGACAGGGAAGAGAGACtgtaccccccaccccccctacTGCCTGCTGAATGGAAAGACAGGGCAGAGTCTGGTTTTAGTTATTCTACCTGAGGTCTTAATTccttaactgcttaattgatttAGCCAATTTGCTTAACTGGATTAATCTGGGATGTCCATCCAAAAACGAATTGAGGACATAACGATACctgcacaaaacacagacagacacgcacagacacacagactcttACACACGCTTCCGCTCTGAGCTTTAACCGAGTTTTGTGGGTATCGTTAGGACGTCATTGAAAGTTTAATCCAGTTTAGCAGATTGTTCTCGCTACCTGCGGACCAGCAGAGAGCTCCAGAGACTAACGCAGACACAGTTTTTCTTGGAGACCGGAGCTGGGTCCACACTGCCCAGCAACCACAGACCATAGACCAGCTCGAGAGAAACCTACCAAGACATCAGTTATctaagcaagagagagagactaggagaggagaaagggaagagagagagaacagtcaAACAACTGTGGTCccttgtatgtgtgtgggagggaggtCCTGACGTCCAGGAATCAGTGGGCCTGGGAGTAGCGTTGTGGATGGGGGGATCAGGGGGTGGGTTCCTGGCCTGCCTAGCTGAAGTACTGTCAGTCACACGCTGAGAGCgatgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147080 True 2084 lncRNA 0.43 3 14855079 14899918

Neighbor

gene id symbol gene type direction distance location
AMCG00018600 NA coding upstream 21015 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 30321 14821991 ~ 14824758 (+)
AMCG00018588 bicdl1 coding upstream 123415 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 208247 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 240634 14599262 ~ 14614445 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 27244 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 49718 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 530366 15430284 ~ 15468382 (+)
AMCG00018619 NA coding downstream 683675 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 738056 15637974 ~ 15648175 (+)
G117389 NA non-coding upstream 57929 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 60840 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 61275 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 68592 14786025 ~ 14786487 (+)
G117381 NA non-coding upstream 70746 14783506 ~ 14784333 (+)
G117521 NA non-coding downstream 592328 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 727421 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 793295 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 795508 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 1183435 16083353 ~ 16121445 (+)
G117383 NA other upstream 66946 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 77969 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 442800 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 455540 14330841 ~ 14399539 (+)
AMCG00018602 LOC102789415 other downstream 54646 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2168294 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3081222 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3819288 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3927679 18827597 ~ 18840095 (+)

Expression


Co-expression Network