G117381


Basic Information

Item Value
gene id G117381
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14783506 ~ 14784333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147082
gctgCAACTGTATGGGGTTTGAGAACTCTCTCtctgggggaggaggggggggtagCACAGAATGAGATATTTAGATATGTTGGATTAAAAATGTCTTGACAAGCACAGCCTCTGGCTTGTGGTCAGAACTTTTCCAAAAACACTGGTCAGCCACTCCTACAGatctttatatttgtatatatatttggatcCAAACCTCTATCTGTATAtttatctatcaatctatctatatatgtatttgtagatGTGATTttaggttttgtatttttaatttaagaaaaaaaaaaatctatagaaaaagtttacaaaaatattgtCCCGATATATACTTTACCAAGCTGTAAAAATGCACCTTTGATTTTCGTGTGAGAGACAaacagagatagagacagagagagagagacagacaccaCTTGGCTGACAGAAATTTGAGCTCTGGTCtgtgttgtaaaaataaatctcactaTAAAAAAATAGAGACACCAAGTGtctgagtgtgtatgtattcGTGCGTCTCTCTCTTGTGCTGGTGTGAGtcggtgtgtgtatgtgggtgtgCATCTCTCTGaatatgtgtgggtgtgtgtcggTGAGTGCATGTCTCCGAGTGTGTGGCATTGAATGTAGACTGCATGCAGAGACGGACAGCTCCTCCCTTCACCTTAGACAGACGGAGACAGACAGGCTGCAGAGGCGGGATCAGTATCaggctggggagggggggtaggAGGTGTCGTTGGTTGTGTGCTGGAGTTGTGTGGATTGGCGTTTGTAGTGAATGGCCTGGTCTTCTAGTGgctctcctcccctcctcctttcTCATCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147082 True 828 lncRNA 0.43 1 14783506 14784333

Neighbor

gene id symbol gene type direction distance location
AMCG00018588 bicdl1 coding upstream 51842 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 136674 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 169061 14599262 ~ 14614445 (+)
AMCG00018577 NA coding upstream 195478 14574260 ~ 14588028 (+)
AMCG00018581 NA coding upstream 225706 14554089 ~ 14557800 (+)
AMCG00018593 NA coding downstream 37658 14821991 ~ 14824758 (+)
AMCG00018600 NA coding downstream 47167 14831500 ~ 14834064 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 142829 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 165303 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 645951 15430284 ~ 15468382 (+)
G117353 NA non-coding upstream 45179 14736096 ~ 14738327 (+)
G117209 NA non-coding upstream 249306 14533963 ~ 14534200 (+)
G117197 NA non-coding upstream 344415 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 538188 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 539303 14242864 ~ 14244203 (+)
G117382 NA non-coding downstream 1692 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 8463 14792796 ~ 14793804 (+)
G117388 NA non-coding downstream 9552 14793885 ~ 14794239 (+)
G117389 NA non-coding downstream 12198 14796531 ~ 14797150 (+)
G117380 NA non-coding downstream 70746 14855079 ~ 14899918 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 6396 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 371227 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 383967 14330841 ~ 14399539 (+)
G117178 NA other upstream 435765 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 540789 14239242 ~ 14242717 (+)
G117383 NA other downstream 2290 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 170231 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2283879 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3196807 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3934873 18719206 ~ 18721343 (+)

Expression


Co-expression Network