G117387


Basic Information

Item Value
gene id G117387
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14792796 ~ 14793804 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147088
GGGAATTTATTGCTGAATTTCTTGAGAAGGTGTGTCCAGAATTAAACAAGCCACAAGACAGATGCCAGGGGGAAGTTTTTCAACTTAAAAAGTACGTCAACTAttcatgaaatcaggcagattgtGACTCAAACATAGCTTTGCACATCACTATGGGACACATACGGCAAAAAAACATATCAACCATTGTCTGGTGCTTATCAgagatctatttcggtggagctcAGTTATTGAAACGGATGAGGATGCACGTTCGATTTGTGTGcttgctagaaatatgcgtcttcattggaatCAGCCGTTTCCACTGCTGATTTAGGAGTTTTTTTTGTGAATACAAGTCTCTTGTTGCGACAcccgaattcatcaataacatctctGTAAATTAGTTTGAGGTCCTAATTTATGTACAGGTGCACTAGCCCATAAAGTCTTTCTTCAGTCACAGTGGAgcagaaatatgttttcagtAGTTTTAACACACTGAATGATCGATCCCATTCCCGTCGTGACTGGAATGTTAAACAACCCTCAGTATTAAGCTTTACGCATCAGGAGATCCGCCTATTAGGCATAGCGGACATAACACTGTACTGCAGCACTCAGAAGAACTGCTGAGGTGCACTGTTTGAATCCTGAGTGGGGAGCTCCGACCTGCAAAAGAATCAcgaattgtttttgtaattgtcatGCCCTCCCCCCGACTAAATACACcactgagtgtgtctgtgtgttctgCCCACTCCTTGGCTGGGGACTCACGTTGCTCTGCACCTTGAAGTCAGACAGTGAGGCCATGAGCTCGTCCAGCTCGCGTGTGGCCGAAGATGCTGATATCCGTGCCTGCTGCTGTGTGGGGGTGTCCCTCTGTCCATCCGTCACCTCAGAATGCACCACCGAGGTGGTGGGCCTGCAGATAAGACGCACAGACAAGAGGTGAGCGAGGGCTCGTGCCAAAGATCCAGCACATTCAGGACAGTTTTAGGATTTGGTGAAGGGCGGAGGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147088 True 1009 lncRNA 0.46 1 14792796 14793804

Neighbor

gene id symbol gene type direction distance location
AMCG00018588 bicdl1 coding upstream 61132 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 145964 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 178351 14599262 ~ 14614445 (+)
AMCG00018577 NA coding upstream 204768 14574260 ~ 14588028 (+)
AMCG00018581 NA coding upstream 234996 14554089 ~ 14557800 (+)
AMCG00018593 NA coding downstream 28187 14821991 ~ 14824758 (+)
AMCG00018600 NA coding downstream 37696 14831500 ~ 14834064 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 133358 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 155832 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 636480 15430284 ~ 15468382 (+)
G117382 NA non-coding upstream 6309 14786025 ~ 14786487 (+)
G117381 NA non-coding upstream 8463 14783506 ~ 14784333 (+)
G117353 NA non-coding upstream 54469 14736096 ~ 14738327 (+)
G117209 NA non-coding upstream 258596 14533963 ~ 14534200 (+)
G117197 NA non-coding upstream 353705 14437992 ~ 14439091 (+)
G117388 NA non-coding downstream 81 14793885 ~ 14794239 (+)
G117389 NA non-coding downstream 2727 14796531 ~ 14797150 (+)
G117380 NA non-coding downstream 61275 14855079 ~ 14899918 (+)
G117521 NA non-coding downstream 698442 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 833535 15627339 ~ 15627719 (+)
G117383 NA other upstream 4663 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 15686 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 380517 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 393257 14330841 ~ 14399539 (+)
G117178 NA other upstream 445055 14345090 ~ 14347741 (+)
AMCG00018602 LOC102789415 other downstream 160760 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2274408 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3187336 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3925402 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 4033793 18827597 ~ 18840095 (+)

Expression


Co-expression Network