G117389


Basic Information

Item Value
gene id G117389
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14796531 ~ 14797150 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147090
CTGTAGACGTGGTCCTCTTCGCTGTGAGATGggggggggctgctgctgctgtcctggGACCCTGAGGACACTCCCTTCACTATGGAGCTGTAAGACTGAGGACAGTGAGGACAGAGTGAGTGTAGATCAGGAGACTATTTGATCGTCACACTTCCTTCTACACAGCTGCACTAAGGTAGTGTTACAGTTACTGCCACACTACAACACAACACGGGGGGTTAATTAGAGGTATATCTACAGGTACAACACAGCTCAACAGGGACAGCTCCTGCACAGCTCAACAGTGACTGACCTGCGAGGGGGAGTAGTGGGAGGCGGGGGGGGGCTGCGAGGGCCAGGCATCAGCGGGGTCAAGTACGGTGCCGTTGAGCGCCTCCACGGAGGGCGGGGGGGGCACAGGGGGCGGGGCAATGTCCTGGTAAGTGGGCCCCCCAGTGGGGTACGAGTAGGGGGCCTCCTCGGACAGGAACACAGGCCGCTTCGAGATGTGCGAGGTCGTCGACTCAAGGTCAGCTAGCAGGGCatctggggagagagagagagagagagagagacgcacagtcAGTGGGCCTCTAGACTTCTGACCAGAGGGCAGCAACAATGATAACAACTGGAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147090 True 620 lncRNA 0.59 1 14796531 14797150

Neighbor

gene id symbol gene type direction distance location
AMCG00018588 bicdl1 coding upstream 64867 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 149699 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 182086 14599262 ~ 14614445 (+)
AMCG00018577 NA coding upstream 208503 14574260 ~ 14588028 (+)
AMCG00018581 NA coding upstream 238731 14554089 ~ 14557800 (+)
AMCG00018593 NA coding downstream 24841 14821991 ~ 14824758 (+)
AMCG00018600 NA coding downstream 34350 14831500 ~ 14834064 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 130012 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 152486 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 633134 15430284 ~ 15468382 (+)
G117388 NA non-coding upstream 2292 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 2727 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 10044 14786025 ~ 14786487 (+)
G117381 NA non-coding upstream 12198 14783506 ~ 14784333 (+)
G117353 NA non-coding upstream 58204 14736096 ~ 14738327 (+)
G117380 NA non-coding downstream 57929 14855079 ~ 14899918 (+)
G117521 NA non-coding downstream 695096 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 830189 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 896063 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 898276 15695426 ~ 15698865 (+)
G117383 NA other upstream 8398 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 19421 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 384252 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 396992 14330841 ~ 14399539 (+)
AMCG00018602 LOC102789415 other downstream 157414 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2271062 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3183990 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3922056 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 4030447 18827597 ~ 18840095 (+)

Expression


Co-expression Network