G117557


Basic Information

Item Value
gene id G117557
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15627339 ~ 15627719 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147297
TTCCCTGTTGCACTACTGTGGCCGCTTCAGCTAGCAGTGCAATAATGAAAGGGCATCAGTCTTAACTGCCTGTACTACCAATGGAAAACTCCACCACGCCAAAGAGCAAGCGGAGGGGAACATGACGCGCCATTGAGAAGAATGTATTccaagaaacatttttatattcccAATAAAGACACGTCTTTACATgcatgtgtatattttcaattgcaataaacgagaaaataaacaaaataaaataagccaaTCGTTATTGTTGATGGTCATTGCATTGCACAGAGATTTTGGAGTACATCtgtaagttaaaaaataatacgaGGCCGTAGCATAACTgggatgtatttataattaaacaattaggcTCTTAAAATATGTAGA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU147297 True 381 lncRNA 0.37 1 15627339 15627719

Neighbor

gene id symbol gene type direction distance location
AMCG00018619 NA coding upstream 42252 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 158957 15430284 ~ 15468382 (+)
AMCG00018603 ufd1l coding upstream 673076 14949636 ~ 14954263 (+)
AMCG00018608 cldn5,LOC103357131 coding upstream 699815 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 793275 14831500 ~ 14834064 (+)
AMCG00018618 NA coding downstream 10255 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 41096 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 54736 15682455 ~ 15691741 (+)
AMCG00018623 NA coding downstream 144590 15772309 ~ 15777303 (+)
AMCG00018625 NA coding downstream 158174 15785893 ~ 15790897 (+)
G117521 NA non-coding upstream 97998 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 727421 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 830189 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 833100 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 833535 14792796 ~ 14793804 (+)
G117574 NA non-coding downstream 65494 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 67707 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 455634 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1121150 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1381179 17008898 ~ 17009246 (+)
AMCG00018602 LOC102789415 other upstream 645634 14954564 ~ 14981705 (+)
G117383 NA other upstream 839206 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 850229 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1215060 14408958 ~ 14412279 (+)
G117178 NA other upstream 1279598 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1440493 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2353421 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3091487 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3199878 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3266616 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029924 dre-mir-130b non-coding NC_007116.7 CM002889.2 13299331 ~ 13299414 (+)
grasscarp (Ctenopharyngodon idella) G283006 NA non-coding CI01000071 null 4471619 ~ 4472426 (+)
mexican tetra (Astyanax mexicanus) G323979 NA non-coding NW_019172901.1 APWO02000130.1 225393 ~ 225827 (+)