G117573


Basic Information

Item Value
gene id G117573
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15695426 ~ 15698865 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147317
aaaaagctcataCCCAAATTcacaaactattttttaaaccaaagcACATTTGAATGATTATGGAACCTTGTGTGGCTCAAAAAGATACGTATGTATTTATCTCAGTTTACATAAACTTTTACAGTTTCAGACCTCAGCAGAAGTGAGACCAGTCAAGAGTTTTGTTGCTTTTCCCTAAGTTGCTGCCAAAGCCAAGGCATTCATTTTGACATGCTTTTGTGACCCTGAGAAAAGGCCGGTGCCTGTTTTAAATAATGGGGGTAGGGTCTTAGCAAGGGCCCCCTCCAGCTGGCTGTGCCGTCTTTGTAGATGCCTGCTCTTTTGTGGCTCAGTGTTGCCTGGCTTGAACGAGCTAATAGGAGGGTGACGGTTGGCCAGGGGCTGGGTTGAGTTTTAAAAAAGGGGTCTTgtcttatctttttttttttttttttaaggattgcccaaaacatttaaaatagttatatgAATGTGTTGGGGTTTCATAAATGATATAGATACACAGAagctttatatttacatttgtatctaTGATTTTGGGAGATCTTTTTAAGGCAAATACGGTACCGAAGATGGGTCTGCTTTGGAAgatcttttccttttgttttcccctcagCTGTGACAGTAACCTGGAGTTTGAATGTTATTCTGTtggttatttttacatacaaattatttgttCTCCAGTTTCCTAAACTGTGttgcctgtttatttttattttttttattttttggagaaAAGCAAATCTGTATTCTGACTGGCCTCACTTTATACAAAGATGGTGCAAACACTTATTGacagtgttcttttttttaatcaaatgtctATTATTGTCagtaatgaatgtatttatttttcagatccTGTATTCTTTTGCTAAGGATTCAcgcaatgtgaaataaagagtGCACAGggtccttttctttttattaattttttttaaccttttttttttttttttttacaggatttcaagctaagagaaaacaaaaatgagacTCAAAACATAGCCATAAACCATAACCTGTGAAGTTAGTACAAGGAATGgaccttttttgtattttgtttttattttttcccaaagaAGATAAATGACATTCTTTGTACAATTGAAATATACTCTGTTATCTCTGCTAAAATGTACAAACAACCTAGGCTTCACTCTGTACTGCCGATCATGTGTGTAAGTGCTCATTTCTTGTTGGCACTAAAAGTAAACCCTATTGGCAAAGTTGTCATTTAAGCACTGCCAGTATCTTTCCACCACCTGAGGAATAACTGTAAAATGATGTACAGATTCTGAACTTAGGTTGTTCTATTTGTTTTCTAGATCCAAAGCATGGGTGTTGCTAAGGCATAGATGTGCAAGgctatttgttattttttgcaaagaacagacaaaaaaaaaagacattcagcTGATCTTGATGCATATTTTCCTCTGGAAGCCAAAGctctttgaaacaaacaaactaactaaataacaaaaaaaaacacactctaACCTCAAAGACCtcctatttttttaaattattttttttaatcttctccTCTTTCTTGATTTATCTTCTTGTACAGATGTGGATTTAAATAGCTTtatgaaatgcacttttttatgtttgaaaaaCTTCTAACGAGTCCCTGAGTCACCCATACCTGTCCTCATTTAATTAGTTTGTGTCATTACCTCATTTTAgtgttataaatgtgtatatttctgtttcattatTCAGTGTTGCAAAGCTTTAAACGACATAGAGGAGATAGCAGGGACTCGAAAGAGCTTTAGTTTTCACTTTCCTACGAAAGCTAATCCAcattaacttaaatatatatatatattatatatatagttctgtCTCTTAGACCTCATAGGACACGCAAACATCACTTTTTACTAATTTCGTTAGCTTTTATTAACGGTTTTGTTCCTGTCATTTCTTTATCCCCTGGCTTTTTGCAAACAGCCGTTCGATCCCTCCTTAGGTCCATAGATGCCCTAAATTACCAATACATATGTAGCCCTTaatgctttttagtttttctcttgtCAAATTAAACCAAAGTCAGCTATAACATCCAATGCAAACAGTGTATGTGTTCTGTTTGACTTAGAGTTACCAAACTGATAAGATGCAGTCATGTCAGGTGCCTTCTGACATCATCTTCTCAAGCTTTACTTCATCACTCTTCCACTAAACGTTTGCAGATATTTCCTCCCCCCAGTGTAATTGTGAGCTCTAGCCCATTATCCTTACTAAACCTATATGCTTCTACCACTAATGCAGCAGTATTCTCTGTAAATAGTTGGGCATGGTACATTCTTTTGTGCAAGTGTCATTTTAAAGTACctcaaaccaaaccaaaccaaaccataTACCATGTTTACAACTGCTCACGCAATCTTGATAGGCCGCTGAGAATGAAAACCTAAAGGACTGGTTTCACAGGCACAGATTAGCACTATTCAATGTTATGTTATGATAGTTAGGGTGGTCAAATACTaatgctaatcaaggtctgtgaaatcaGCTGTAAGAGTTTAGCTTCAGTCTCCAGATACCGTCTGACTAAgattgctttgtgtgtgtatgtgtgtgtgtgtgtgttattacaACAGatagtgtaataaaaataatgatcaacAGCTCTATCCCCGTCTGTAATTGTGATTTAGCAATTTTTAACAAAAAGTGTAAATTTAAACGCACATTAATTAGAGCTGCTATTCTTTGTACAGAGGGAGAAGGAATGCGCCAGACTGAACCACGAGGAGggaaaagttattttgtttttatttttatttgccattctttttcggtcaacaaaaaataagtttctAAAAAGCGCAGTCCGGTAAAAGATTGGGGATGTAAATAATACATGGAGAATCTGCAGTTCAAAGGCACCGAATTCGAGGAGCAGGTTGTTTGACCATAAATAATTGAGAGAcaaagaattttttttttttactgaagcCTTGAGCCTGCCTTGCTATTGGCAACACCCAAGCTCTGCTCTGTTCCAACTCCTAAGAGAGCTTCTATTCAGGTCAGGGCTGCATATAGTTTGCAGCTCAAAACTCAACgtgtcataaaaatatataattcagtaTAAAACGTGTGCTGACCTCAGCATTCAAAATCTTGCAGTCTTAATGTACAGCAATGAGAAAAAGAAACTGTTATTTTATGATCTTTTCATTAAAAGCTTGATTGAAAACGAACATGTGCATCACCTTCTTCTTAGTGTCTGGACCTTGTCACTGatttgcagaaatgtgtgcTGTGATGGCCGGGCTCTGTGAGCGTGTCTGTTAACACTTGTGAATGTACGGATATGTCTGCAGAGCTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147317 True 3357 lncRNA 0.36 3 15695426 15698865

Neighbor

gene id symbol gene type direction distance location
AMCG00018624 NA coding upstream 3685 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 25757 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 47251 15637974 ~ 15648175 (+)
AMCG00018619 NA coding upstream 110339 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 227044 15430284 ~ 15468382 (+)
AMCG00018623 NA coding downstream 73444 15772309 ~ 15777303 (+)
AMCG00018625 NA coding downstream 87028 15785893 ~ 15790897 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 313422 16012287 ~ 16025098 (+)
AMCG00018635 NA coding downstream 557332 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 581968 16280833 ~ 16286663 (+)
G117574 NA non-coding upstream 173 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 67707 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 166085 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 795508 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 898276 14796531 ~ 14797150 (+)
G117660 NA non-coding downstream 384488 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1050004 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1310033 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1454917 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 1461897 17160762 ~ 17161040 (+)
AMCG00018602 LOC102789415 other upstream 713721 14954564 ~ 14981705 (+)
G117383 NA other upstream 907293 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 918316 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1283147 14408958 ~ 14412279 (+)
G117178 NA other upstream 1347685 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1369347 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2282275 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3020341 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3128732 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3195470 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding NC_053117.1 CM020914.1 26761391 ~ 26829185 (+)