G117660


Basic Information

Item Value
gene id G117660
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16083353 ~ 16121445 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147415
acctgtatttttttctccttttattttaacaagctGAATACTTGCCGCAGGATATTAGTGAAATTAACATAATACATTCTGTCACTGTGGCATTACTTCTGATCCCTACGAAAGCATGAACAACTTACTCTTCTATGAAATCAAtccattgtaatgttttctgattattatcttttttttcaggtttataatacaatgtaatacaaGGCAAAAACCCACCACCAGTCTAGACTACACTGATAACGCTAAGAGAgatagagtgtgtgtgagagagagagagagagagagtgtgagggagagaaagagagagagttatattatataaaacacattgttaatttgttttcttttaatctacCATGAAAAGTTTAAGGCACATGATAGttacaaacacatttgctaCTAAGTAGTACAGTTACTTTATTTGAACGATTTTGATCAGTGATATATCTACATAGGTAGGTCTTGCTcatccttgtttttttgttttgtttctttttttatttccagctgCACCTCGCCAATGTTCCTTCACAGCAAGATTTATCAGTACAATTAAAGTAcagtttataatatatttagcaACAACCCCCCGgcccttatatatatattccatatacataggtatatatatatggaatacaATTTCAGGCCCTTTGGTAGTAAAGTATACTGCGAAATAGCAGCTAGGGATAGACAGAGATGGAAATCTGATGAAagcacacaatataaatatttcaatgtgggttattttctttttttcaaattaaagttaGTATTGTAATTCTAGTAATATACTTCTTTGTaaacatattgtaaaaatacaagCTTTAGAAAGTCACATCACATAGAAAATAATACTTCAAAGCAGGCACATGCCAGTCTCCTTGTAGAATCACAAACTGACCAGTCCTGGATTTCTGTGCTGCACGACTGACTGCCGCAGCCTCAAGCCCCCCACATTGCTTGCATTAGGTTGTATAGCTACAACCAAAAAAATGGAGTACCGCCATTCAACTCAATCTATATCTAAAGAGTATTTTGATTTTTCTTGGCCTGTATTTGAAAACAGGATCTTTCTCATGTTAACAATCTTTGAAACATACCCCACAacgcaaaaaaaaagaataaataaaagcgAGGAAGTTTGTTTCCAGCTTTGCAAACCTGCTAAAACTGCCTCTATCTTTTTCAGGCTGATTCCTAACGGCTTACAGCATTGTTTCCTATGAGAACTGGCAGTTAGAAGAACATATTATTTaacatcttacattttttttctttttttttcatgcttgcTTTAAAGACTTAAAAAGATGCATTAGTAAATCAGAGCACAGATACGTCAAATAGTCTTAAGCGAGTCAGCATAATGGCAGTGAGATGAGAGAATTCAATCATATCGGCATCTCTAGTCTGTCTATCCCTGCCGCAAATGCCTTGTCTAATAAACCGTTTGTCTTACTTTATCCTGTCCCCTCCGCCCCCACCCCAAAGATTTTGGCAACCAGGTTATcgattgaaaatgtatttgttttttgttttttttgtttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147415 True 1558 lncRNA 0.35 2 16083353 16121445

Neighbor

gene id symbol gene type direction distance location
AMCG00018630 tbx1,LOC102781442 coding upstream 58255 16012287 ~ 16025098 (+)
AMCG00018625 NA coding upstream 292456 15785893 ~ 15790897 (+)
AMCG00018623 NA coding upstream 306050 15772309 ~ 15777303 (+)
AMCG00018624 NA coding upstream 391612 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 413684 15668815 ~ 15669669 (+)
AMCG00018635 NA coding downstream 134752 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 159388 16280833 ~ 16286663 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding downstream 174593 16296038 ~ 16298711 (+)
AMCG00018636 pgam5,LOC107089933 coding downstream 252451 16373896 ~ 16378701 (+)
AMCG00018641 NA coding downstream 297594 16419039 ~ 16434303 (+)
G117573 NA non-coding upstream 384488 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 388100 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 455634 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 554012 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 1183435 14855079 ~ 14899918 (+)
G117768 NA non-coding downstream 627424 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 887453 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1032337 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 1039317 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 1040069 17161514 ~ 17161723 (+)
AMCG00018602 LOC102789415 other upstream 1101648 14954564 ~ 14981705 (+)
G117383 NA other upstream 1295220 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1306243 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1671074 14408958 ~ 14412279 (+)
G117178 NA other upstream 1735612 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 946767 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1859695 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2597761 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2706152 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2772890 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location