G117801


Basic Information

Item Value
gene id G117801
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17153782 ~ 17155824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147612
GCGAATTGTACATTTACACCCCACAAATGGTGTTGAAATGATTGCTCAAGGTGAACATTAATACTCAATATGTGTTCAATACAACAGATACAAAATTCAATTGGAAAGAACGACGCCACACTGTGTTACTtgaataaaactgtatttgtacaGGTCTCTTTACACTTTGTTACAAAACTGTATAGTactaaaatttaaaaatcagtttttgGTCAGAGAATATTTAATCTTTGTGTGCAATTATCATGTATTTACAAAGTCTCATGTTAGTGAtttctcaaacaaacaaaaaaaatgatttcaatAACGTTCATACACTCTCAACATAAGACATGGcttaaagataaatatattagtaaataaatattcagagaACATATTTCCATAAATGAAATGTGCTGCTAtacatatacagaaatatacacaGATTGATTTTCTAgccttttaaaacattgtaaaatggtAATGACggagaaaataattacattaaaaaattaaaaatattacatttttatacaatCCTTTTAAGtgctacaaataaaaaaaaattaaatagtgCCTGAAGTACccaaaaatgttatatttgtagTACAGATCTCTAAGAAAAGGCAAGATTAGATTCTTATAGTAATCATTAATTACAGCACTGAGTTATAAATAGGGCATTTAAAACTGGTAGTCTTTTAGCAGTATGGATACATTTCATAGAAACAGTATAAAaagtctgcaaaacaaacacaaaaggcaTATACACTGACAACATCTGAAAGGTTTATAATGTTAAAAAGTGGAGACACTTTTTCGAAATCCGCCTTTGGGGATTCATCGGTCTTTCAACCATCTCTCTCGACTACTTGACTTTGGCCTTTTTCTGACAATCAGAATTAAGCTGTGCTTCTCTacctgtatatattataatgactATACAACACAGACTTTAAAAAGGTCTGGGGGCCCAGTAGAAAAAGGCTACGCAAAAGGTCAGAAAGACACTGTAGAGAACGGACTGACACACCCAAACTGTGCTATGAAAGTTAGACTTGCAAAATTAGTCTATTATTTCCCTGTTACGCCACTGCTATAACTATTTGTTACCTCTGTTATACCATTGTTATAACGTAGCTCTATTTGTTACTCATTAGCTCTTTTGTTCATCACAAAGCTACAGTGCTGAAACCAAACTACACGAATCGACgacaaacaacaaacactaTTAAATGCTAGTTTGCTACTAAGGCAGCAGTAGCCCTGAGTGTACGGGAGGGCTGATGCTCCCAAGAGCAAAGCCTGATGTCCTGGTGTCACCTGGTTTTCCTAACTCAAGCAGAGCACATCTGTAAGACTGGTTTTCCTGAAACCCAGACGAATATCAACAAGAACTACAACGTGAAAGGGCACAACAATTCTGGGTTAAAGGAAACGGTGCTAAATTTTGGCATTTCTCCATATTACCACTTTCCTGTGTTTGTCAaagctaaaaaatatatatattctttatacatatacatatatacacatatatatatatatatatatatatatatatatgtatattatataacaaaaataaaaaaaccctCAAAAAAGAAGTCTTACACAAACTGGAGTCTTAATAttaatgcatgaaaaaaaaaaaaaaaaaaaaacttcccgTGTAACCGATCTTGAAGCCTCACAGGCTCGGCTCCACTGTGCAGTCTCTCTCCACAGGGTGTGACGGTCCCGACCCTACACACAGAGGACACTTTGTTAGAGAGGCAGGTCAGAGTGGTTTCAAAGCGTGCAAACTGTTTTCAAAGTCCACtttaaacacacgcacacacactcatatctatctatcagtctataaacattttataaaaacaaaacaaaaaacgtatgAGCTGTCAGAGAATATGGTTCGATTTGCAGATGAAAAGCTAGAATGGAATTAATAGAAACAGCATGATACACAAAAATTGTTGTCCAGCAAAAGACTCAGATAACTGAGGCAAAAACGATCAATGCAGCACTGCTCTTCCTTGTGAAATGGAATCAAACAgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147612 True 2043 lncRNA 0.34 1 17153782 17155824

Neighbor

gene id symbol gene type direction distance location
AMCG00018647 LOC106592780 coding upstream 4426 17141389 ~ 17149356 (+)
AMCG00018648 NA coding upstream 63760 17071354 ~ 17090022 (+)
AMCG00018641 NA coding upstream 719479 16419039 ~ 16434303 (+)
AMCG00018636 pgam5,LOC107089933 coding upstream 775081 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 855071 16296038 ~ 16298711 (+)
AMCG00018654 NA coding downstream 97331 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 134878 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 391136 17546960 ~ 17574431 (+)
AMCG00018662 NA coding downstream 422111 17577935 ~ 17584564 (+)
AMCG00018663 NA coding downstream 429696 17585520 ~ 17593696 (+)
G117783 NA non-coding upstream 144536 17008898 ~ 17009246 (+)
G117768 NA non-coding upstream 403811 16748869 ~ 16749971 (+)
G117660 NA non-coding upstream 1032337 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 1454917 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 1458529 15693213 ~ 15695253 (+)
G117804 NA non-coding downstream 4938 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 5690 17161514 ~ 17161723 (+)
G117808 znrf3,LOC106584905 non-coding downstream 68188 17224012 ~ 17224609 (+)
G117813 NA non-coding downstream 95045 17250869 ~ 17253023 (+)
G117887 NA non-coding downstream 428927 17584751 ~ 17585112 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 84112 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2172077 14954564 ~ 14981705 (+)
G117383 NA other upstream 2365649 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2376672 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2741503 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 825316 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1563382 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1671773 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1738511 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 2067344 19223168 ~ 19234351 (+)

Expression


Co-expression Network