G118005 (LOC101154678)


Basic Information

Item Value
gene id G118005
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18217803 ~ 18218099 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147877
ctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgcttgAGCtttgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtggttccaaacttcttccatttacagatgatggaggccactgtgctcattgggaccttcaatgctgcagaaatgtttctgtacccttccccagatctg

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147877 True 297 lncRNA 0.54 1 18217803 18218099

Neighbor

gene id symbol gene type direction distance location
AMCG00018686 NA coding upstream 78262 18138045 ~ 18139541 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding upstream 182175 18023027 ~ 18035628 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding upstream 258278 17933745 ~ 17959525 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding upstream 350818 17840752 ~ 17866985 (+)
AMCG00018668 NA coding upstream 394203 17807007 ~ 17823600 (+)
AMCG00018698 NA coding downstream 127858 18345957 ~ 18437784 (+)
AMCG00018697 NA coding downstream 309644 18527743 ~ 18528121 (+)
AMCG00018693 NA coding downstream 344434 18562533 ~ 18571339 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding downstream 372867 18590966 ~ 18605862 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding downstream 428420 18646519 ~ 18659398 (+)
G117959 NA non-coding upstream 236864 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 632691 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 964780 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 993194 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 1056080 17161514 ~ 17161723 (+)
G118013 NA non-coding downstream 248269 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 456175 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1238043 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 1249724 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 1261592 19479691 ~ 19479956 (+)
AMCG00018681 NA other upstream 234786 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1148133 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3236098 14954564 ~ 14981705 (+)
G117383 NA other upstream 3429670 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3440693 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 501107 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 609498 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 676236 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1005069 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 1155373 19373472 ~ 19482092 (+)

Expression


Co-expression Network