G118043 (LOC104945943)


Basic Information

Item Value
gene id G118043
gene name LOC104945943
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18674274 ~ 18676226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147918
ATCTGAGCATCAACAGTTTTAATTACACTGATAGTTACAAAGacttcttaaaatgtataataaaatacatgttttagatTACAAGTTTTCATCCCTCTGAAAATGCATCCAAAAAGCAAAAAGAGAGGATTTGAGAGCCCCAGAAAACAGAACACTCTCACTGTGGAATCGAACACAGATAGGAATTTGTTTAAATGCTTAACAAGGTGTCCCCAGGACAAGCCagcactgatttatttttcctccagcATTTCAGTTCATGTTTGTGAGAGGTATGCAGTCGGTTCCTCACCCTCTACTACACCAGTATAACTTATCTGGCCATTTATAATTGTGTAAATACCGGGTTATATAAACTGATCTGGAGTAACAATGATCTGGATGTTATAGAAACCCCACACTCCTCTACAGATCCAAAAGACAGGACTGTGCGTTCGGGATCACCTCTAAGTCAGGGCAAAACAACACGGCTGCTCCGTCTGCCTTCTCCAGAAGACCCCACTGTCAGCATACAGTTACTGCTTCTtggctttcttcttcttctcggCCTTGGTGGTGTCATCGTGGACCTTCCTCTTGGCTGCTAGTTTGTTTGCCTCTCGGACTTTCCTCTTCTTGCCGAACATGATCTTGTCGTAGAGGtacttctctttcttcttcatcatcatgATGGCCAGGCGCTTCTCCTCGGCCTTCTCGTTCTGCTCCGTGTGCATCTTGTTCTCCATCTTCACCTTGCCTGGGGTCACCTTCACCGCGAGGGCCTTGCCCTGAGATCTCTGCTTCTCCATCTGTTTCAGGTTCTTCTCTTCGGATATCTCCTCGTCATCCAGCTCTTCATCCTCCGagccctcctcctcttcctcagagtcttcctcctcctcctcctcctcctcttcctcactctCTGCCCTCTCTGTCCTCTCTCCCCGCTGGAGGGCTAGCATATTCAGCTTCTCAGGAGGCACATAGTCGCCATCTTTCTCTTGCACGAAGGGtgagaggtgggggggcagggtgaCGCCAGCGAAAAAGTCCTCCACGGGCAGACGCAGCCTGGCATTGACACAGTCGAACACCCACTGGGGCTGCACATAGTACCTGCCACAACAATCAAGACCAGTCAGCAACAACGCCATTTTTCAGATTGTCCTACAATTATTTTTAGTCTTCCTACCAATACTTTATTAAAACTCTATATACCAAGcaatgtgatgtgtttttaatcaggttacattttaatttaaatttaatataaaacacgTCCCCCTGAAAATGAACaatttcctttttatgtttttattcccaAATCTCTCTTCTGCAGTCCCTTGGGGGTTCAGAGCAGGAACAATGACAAAGCGTGACTATCCAGCTCCCTCCCCCAGGACGCTGCAGGAGAAAGGGCTGCATTGAGCCCGGCAGCGCGGGTCTGAAAGGACTCTTTGTGGGCCGCTGCGATCCCAGTGCGGAGAGGGCTGCGCacggggggaaaaaacaaagcttCC

Function

NR:

description
PREDICTED: pescadillo-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147918 True 1505 lncRNA 0.47 4 18674274 18676226

Neighbor

gene id symbol gene type direction distance location
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 14876 18646519 ~ 18659398 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 68412 18590966 ~ 18605862 (+)
AMCG00018693 NA coding upstream 102935 18562533 ~ 18571339 (+)
AMCG00018697 NA coding upstream 146153 18527743 ~ 18528121 (+)
AMCG00018698 NA coding upstream 236490 18345957 ~ 18437784 (+)
AMCG00018701 NA coding downstream 8913 18685139 ~ 18690239 (+)
AMCG00018708 NA coding downstream 52810 18729036 ~ 18729506 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 56881 18733107 ~ 18734584 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 133150 18809376 ~ 18821287 (+)
AMCG00018710 git2 coding downstream 170350 18846576 ~ 18869867 (+)
G118005 LOC101154678 non-coding upstream 456175 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 693335 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1089162 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1421251 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 1449665 17224012 ~ 17224609 (+)
G118285 NA non-coding downstream 779916 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 791597 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 803465 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 900738 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1317900 19994126 ~ 19994329 (+)
AMCG00018681 NA other upstream 691257 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1604604 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3692569 14954564 ~ 14981705 (+)
G117383 NA other upstream 3886141 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3897164 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 42980 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 151371 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 218109 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 546942 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 697246 19373472 ~ 19482092 (+)

Expression


Co-expression Network