G118285


Basic Information

Item Value
gene id G118285
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19456142 ~ 19456983 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148221
TGAACACGTACAGGATGGGATTGAGGAAACTGTTGGCGAAGGCAAGAGTAACAACAACACtaactgcttttttaaaaatctcGGTGTCGTGTCGATGGTGGTTTATCTCGAGCATTATGACAATGTGGTAGGGTAACCAGCAGACAAAGAAAGTGGCGATGATGGCAGACATGATTTTGAATGGTTTGTTAGATCTTGCCATCCGATTGTTCTTCAGTTTCCTGATGATGATAGTGTAGCAGAAGACAATCACCACAAAGGGAATCACAAATCCAAAGATGAATCTGCTGAAAGCAACACTTTCatgatttgcattttcataGTTGTTGTAGCACAAAGTTTTCCCTCGACTAGCTGTAATGTCCCTGAATATCAATGGCGGTATACTTAAAAGACAAGCGGCGACCCAGGCAAGGAAGGCTATCACAGAAGCCATCCGTGGTGTGCGGTAGTTCTGGGACCACACTGGGAACACAACAGTCACACAGCGGTCAATACTGATGATGACCAGGAGGAAGATGCTGCTGAACATGTTGAGGAACAGTATGAATGCGTTAAACTTGCACATTAACAATCCAAAGTACCAGTGCGAATCGCAGACAACATGCACAATGTAAAAGGGaaggaaaacacagaacaagAAGTCAGAGATGGCCAAGCTGAGGAACCAGGTGGTGTTCACAGTTCTCTTCATCTTGAAGCCAGTTATCCAGATCACCAAGCCATTTCCACAGAACCCCAGGagaaaaataatggaataaaGCACGGCGATCACATTTCTAAATGCAGAGCTGGCCGTTTCAGTACCGGCAGCGGTGCCAGTGGAAAGGGAAGTTGCGTTG

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU148221 True 842 lncRNA 0.45 1 19456142 19456983

Neighbor

gene id symbol gene type direction distance location
AMCG00018736 sart3 coding upstream 110384 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 128263 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 149402 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 160141 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 173176 19274909 ~ 19282966 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 149039 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 155642 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 219639 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 221788 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 230601 19687584 ~ 19701791 (+)
G118013 NA non-coding upstream 725330 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 779916 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1238043 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1475203 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1871030 17584751 ~ 17585112 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 10840 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 22708 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 119981 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 537143 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 822305 20279288 ~ 20299830 (+)
AMCG00018732 NA other upstream 221791 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 547186 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 616047 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 734799 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1473125 17981140 ~ 17983017 (+)
AMCG00018762 NA other downstream 514156 19971139 ~ 19974730 (+)
G118557 NA other downstream 802394 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 915236 20372219 ~ 20374812 (+)
G118623 NA other downstream 1057177 20514160 ~ 20514491 (+)
G118635 NA other downstream 1135753 20592736 ~ 20593016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029993 cmklr1 coding NC_007116.7 CM002889.2 20570573 ~ 20590795 (+)