G118290 (wscd2,LOC107597274,LOC107743343,LOC107696066)


Basic Information

Item Value
gene id G118290
gene name wscd2,LOC107597274,LOC107743343,LOC107696066
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19467823 ~ 19473460 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148226
GCAATACCTTAACATTATATCAAAAAGGGGACAgaatattaatttcctttctcAGGAAATGTACATGTGCATTTGGTCGAGCATACCAGAAACATAATCTGAAACATTGCACAACATATCCCTTTAgcatactgtttttattgttgttgcctttctttctctatttgaactatttttggtaaaaacatgttacattcattccatacaaaatacattcaaagaAGTGACCCCCATACAGTACCAAGTCTAAATCAATAGCATGAAACATTCAAAAGTAGCCCGTGTCAAAAAATAGTTGCAACTCTAAAAATTCCCTTATGTCTttgcattataaattattttgagCTCATTTTCTTTGTACgaactataaaaatatataaggaaataacattttttctatttttgttttaatcagtcctcctttctatttgtattttattttgtgtaggGGTTAAGTTGTGTACTAATGATTCTGTAATGCATGTGTAAAGAATCTGCATTTGTATTCTGCAGCAGCTAGCAACGCACACCCTCCTGCAACATAAACACAGGCACAGCAGGCAGACCACAATTAATAGCATTTGCTACACTTTCGTTCTTAGGAGAAAGTATTATGCACCGTTATTTATGCAGCTGAAAAGAATTTCAGAGGGATCTGTTCTCTGCAATAAGACATTCGGCATAGTTTTGACTATGGGGCTTCAAAGCCAGTATAGATGTGCAACATATAGGAATATAAGAAAAACAGTATTCACTTTTGTTTCTGAAACACAAATGCCAGATATAAGTCACTTCcctgtttttttgcttttttttgtttgtttttacagggTCTAACCTGCTCTTCTGTTGAATTACACTCCACATATTACAAAACCATACATAAACAATTTTAGTTGGAAAATGTTGTGTCAGGAGAGTTTTAGAACACATGAATGCAAATGCTTTTGCAGGAATTCTTTGATCAGTGATGTGTCCTGAAGAATGAAGCAGAtttctttttgcattatttatggTTTTTACTCAACTGGATCTTATACGTTTAATGTCCGGATAACAGCGGTCTATGTCTGACATCCAGGTTAGGATTCAAAATCATTTTCGACGTTAACACGTTTTTGTCAAGCTTCagaaattgtattgtaaaatcgtaattcataaaaatgtatcaccCATTTTCCTTGGATGTCATAGTTATAGTTAAAGCAGAAGGAAAGAAACAGACTGACAGAGAGGAAGTAATCATTGACTCCTTACTCTTACAGAAAAGTCTGTGATGAaaagccccccaaaaaagcCCTAATttagttgtttcttttttatacaGTATTGAGAACAATTCTTCTTTGTAGTGTAGTGTTTAGTCTGACAACAATGTCAGGTTTAAACGCATTGGCAGTTTTTGAAAAGCACTATTAAAAGAGGCTTGAACAAATAATAAGTCCCGGAGAGCAAATTGTTCAAACAACAAAGAACATGAGACATTGATTGTATGTGTTCAGGTCCCAGCTTGCTTTGCAGAATAATGTCAAAATCTCTTGTtgcaaagaaaagaagaaaaaaactatactTTATTACTTTAATGACTGGAACAATAGTGCTTATCAATAGAGTTCATCTATATGAGTCAGTTGTGCTGCGAGAGAAAATGCATCAAAGTTGCCACCAGCACTCTACTATGAAAAGCAAGCCACCACAAGTGATTTGTAACCATATTGTGCCTACCGAGTTAATGTTCACTGTACTCGTACTCAGAACAgaactgaaataattaatagatatgaaatgtaattggttgttgctttgtttaatttgtcagcattaaacatttaaatgttaagtgGGAATATGTTGACCTCTGGTCATGGTCAGCACTGTGAACATTAGTGTCTTTGTGCAGGTCTGAGAAATATATTAGTGAAACGAGTTTATAATTACACTGGTCTTTTAGCAACTGTGATTACATGTTGTGAACAGTCACTATTAAATGTTGCCTTGTTAATTCTAAACAAAATGCACTTAAATCttcaaataataaagtaaaaagaacGGGGATTTTGTCAATGACATACCAAAAGGTAGCTTTACAATTTCCTTTGCATTATCTCCTGTAGAAATTGATATAATGGTCTTGTTCTGCATTGTCCTCACTGGGGTTATAATATGAGTTCATCTAATCTATGAAGAATTCCAAGTGCTAGCCACATTGAGACCGTTtcaaaagtgaaatgcaaagtagatgttgtttttttttgctgatccaagaaaacaattccttcttttaaaaaagGATCTCTTTCACTAACTCAGGGTCAACCACAAACAGCACTGAAAGTGACAAGTTGAATAATCGAGATCTGCACAAGAAACACCTcatagctctcaagtctcaCCCATTGAGATTGAGTTGCATGTATTGAGGCTCCACCTCGCGCTCTCACGCCTAGTTGCTGAAATCTCACGCCTTTCCCCCAAAATATCCTCCCTCAGGCTGTTGGTTTTGCCAGCGGGAGTGGTTACTGTCACCGCATTTCCATAATGTGACAAATCTCACGCATTGATGTTTTGAAAATTTGAGAGCTACTTTAACTTAACTCAAACTTAAAATGTGAGTGGTTTACCCaatgtgttttcctttctttgttatacaaaataacagtCTCTGGGTATCAGTGTGTCATTAAGCATGTCCTTATGTGAAGTCCCTCTGAGACCTCGGATTCTATTGCTGCCttgagagaataaaacaaaatagtaacGATGAGGGGAAAACCTGAAggtttgtattatatttgtataaaatctGGGTCAACTTTGCATATATGTTGTGGCCCTTCTCTAGGGATGCATATCCTTGCTCAGTAACATCATCATTTCGTATtgaaaatatacttaaaatCAGGGGTAAATTTTTTATGTGAAAGTGTATCAAAAGTGGGTCTATTCTGCTTggctatatacagtacatattttaatcttttacaGCATATAATCAAACAGATTTTAATTCAGCCTTCACCCTGAAACACTGACATAtgcaagatttgtttttggcaAATGACAAATTGCTATTTTATTCCAGAGACAAAGAGGTCTAAAATTgtgaatatatgtgtataattgCCAAGTAATTGCACAATCAATTCAACATGCACTGTGCAAGTCAATATGGTTGACAATCGAGGGTCTTAATTGCTCCATCAGATGTAAAGGAGGCTTCATCTCAAGAACATTAGATAAATCAATAGCATGAAGCTCATTTATAAGAAGGTTGCATCATGCAAGGCaagacaaaatgtaattctagTTTTCCAACAGCATCACAgcattaatgttttgttttttctgtttggcttttttttttttctatgaatgGTAATAATCAGATTTAATGGATTGTATGAGtcatatgtatttaaacaggACAAAGATATCTCAGCCTTGTTGCTCAATGCAGATTGCAGGGGGACGGGGAAATCCAAATAGACATTGAGACACTAAGAACTAAAAGAGGTGGCATTTGAAAAGGCAGAACTAGAAACATTGTTCCCTCTGTATGGACCAACTGATATTCTGATGTGTTAAGTACAGTAGTGGGAATCTACAGTGATGAAACATTTGAGTAACCTCTCCCAGGCAACAGAGCCTAGCAGTATAATCTCAGGGCTTCACGATCCTAGTAATAAATGAAGATGCAATAACAATAGTATTTTAGAGAACTAGACTCTCCTGGCCTGACCGCTTGAAAGAGGTTATCAGTTTGTTATGTTATGAGTTACCGAATATGTTTGATGACTCTCCCCCTTCCATAGCCTACAACAGAGTGTTTCAGCCCTAGTCTTGGAGTCCCCTTGTGTCTTCTGGAGATCATTTCTGGTGGCCCTTTACAAAAATACTTTCACGGTTAGATCTTTATCTGCACTCCAATGCTCTAGAAGAGTGGCAATGCTCTAGAACAGCAGCAATGCTCTAGAATGGTGGCAATACTCTAAAATGGtggggttttttttttgcaggctAGCACCCCCTGCAGTGATCCATGATAATCCCGCACCCCCATCAGTGCCCCCAGAGGTGCCGCAGTTTTCTACAATTTACCCCCAGAAAGGTGCAACACACCCTGgttaaaaattatatacatatttagtttCAACCAGAAAGGAAGTAAAATAAAGTCTATCCTATCTGTCCCCATCTTAGTTTCATAATTTGTCATACCTACATAGCTTTAAATGAGGAAAGTCTTAAATGTTGCAATTACTGTAGAGTTAGCATTCATTTCTACCCCCCTCCAAATCTTTAGCAGTTGGAACCAGTTCATGTTCCAATCAAGCAAATTGTTCAGTTTTAGGATTCAATAAGTAACTGAGTGCTCAGTTGGAATGCAAACCTGAAGACACCGGGGTAATCCAGGACCAGAACTGCCCTACACCATTTAGCTTCATGATTTGGTAATGTTCAATTTTATCCGTGAGCTACCCGTACCAAAAACAGatatatcttttaaaaatacaaaatatatttcttgaaaATGGGCATATTCACAAAATGTACCCAGTATATTTGCCTGACCTATTCTAAACGCTATATATGTTGCCCTTTACAGCCAGAGAACGGAGTCTGTATTTTCAATATTGTACACAGATTGTAAGAATATCTGAATTATAGAAAAAGGCTATATGTGTTCTGGGTACGGGTAATAGCAGCACacttataatataaatatatatctctttTCATATAGCTTGTTTTCTGTTATCCACCCCCTGAGTGGAAGAAAACATGGCGGCTGAATATAAATCAGCCATAACTTCATATTTGGACATACTTCCGAATACAAGTACTTTAACAGCGTTAAGAATAGTTACAGCTTTCTTATACTTAAGGCATGAACTtaacacacatttctgtgttGGAGAGGAAATGGTTGACTGCCAGAAGTCAATTCAAATGAAGAGTACATATTGTATTTCATCACCATTTCCCCTTCAGAGAGTGTTGTGCTAACTGCATGTTACCGGTATTGCGAATGTGCAACTGAAGTTCTACATTAACGTATCAGTATTAAGAAGTGTatccacttttttctttttttcactttcttcaTGAAGAAGCTGGGTTGACAGACAGAGatcaagagagacagagaggaagaagTGGAAAGCAGTATCATCTGGGCCTGTATTCCTCTGGGACCCCCGTCACCTTCCTTTTCTTCAGAGCTGCGTCCACTGTCTTGATGTAGCCGTCGATCATGCTTCTCATCTCAGGGGTGTAGGGGTTGTATTCGAGCTTGCGGAGGCCGGAGCGTTTGAAGTTTCCGTCCTTCTGCCCTTCCACACACAGCAGCCGGTCCTCGGACACCTCCAGCCCCAGGAAAGTCACCATCCTCTTCAGCTGGATGAAGAGGTCCTTTTTTAGGTCTTCGAAATGGACCACGTGCACATTTTTCCCGTACTTCAGCCAATCCAAAGTGTGTGAGGCCCACCAAGGTGCAtagtttttcacaaattctgGCCACtctggggagagagaaacaagcaaacaacacTGTTATTACTATTAGGTAAAAATACCAGTTCTTTGGCAAGTGAGTCACTTtcatatgtgtttaaaaataagcaagagggactttttt

Function

symbol description
wscd2 Orthologous to human WSCD2 (WSC domain containing 2).

NR:

description
PREDICTED: WSC domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148226 True 5638 lncRNA 0.37 1 19467823 19473460

Neighbor

gene id symbol gene type direction distance location
AMCG00018736 sart3 coding upstream 122065 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 139944 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 161083 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 171822 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 184857 19274909 ~ 19282966 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 132562 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 139165 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 203162 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 205311 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 214124 19687584 ~ 19701791 (+)
G118285 NA non-coding upstream 10840 19456142 ~ 19456983 (+)
G118013 NA non-coding upstream 737011 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 791597 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1249724 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1486884 17979011 ~ 17980939 (+)
G118291 NA non-coding downstream 6231 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 103504 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 520666 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 805828 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 829210 20302670 ~ 20302958 (+)
AMCG00018732 NA other upstream 233472 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 558867 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 627728 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 746480 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1484806 17981140 ~ 17983017 (+)
AMCG00018762 NA other downstream 497679 19971139 ~ 19974730 (+)
G118557 NA other downstream 785917 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 898759 20372219 ~ 20374812 (+)
G118623 NA other downstream 1040700 20514160 ~ 20514491 (+)
G118635 NA other downstream 1119276 20592736 ~ 20593016 (+)

Expression


Co-expression Network