G118304


Basic Information

Item Value
gene id G118304
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19576964 ~ 19579031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148240
ttattttggtttgttctatttttattgAAGAATAGATTCCAAAAGCAGTCatgtcattctttttttttttcctcctacaTGAATTGTCAAGTAAAAACACATCTGATCAAAGCTAATTTCACATTAGTGCTATCAACTAAACATTAGTTAGTCAatgatgtttctgtttttcatcaAAAAGTCAAAATGTGTATAAAGGAGTTCAATACTTGTGTCATATTCAATATAAATACTATCAAAGCAGTGAGCTCAGTACTTGACATATATAGACAAAGCAGCTAAACATAATTgctcaacaacaaaacaaacataataataataaagattttacTCTAAAAATATAGATAGGCTTGTTTCCattcaaattacaaaacaatatatttatacatttaccaaCCAGTCCTCGGCAACTTAAAATATATCGATGTACATTCCTTTTTCCATGACTGCAATTCTGTAAATCGAAAACCTCAGTGCAAGGAATCACGGCTGTACCGAGGCTGGGATGTTTTGCAGGGTGTTTTATCTCCTTGTTTGCTCTGCTCTCCTTTGTAATTGACTTCTAGTATGTTGGCTCCCTTTACAAATTGAAACCTAAGTGAGAAAAGATGGCTGATTtgggggagacagagagcaaCCTGCGTAGGACATCAGTGCATtcatctttccatttttttgATCCACAGCCCTAGTGACGGCAATACCCTTGACGGTGTGTGCCGAGCTGACAGCAGTGCTTGAGGCCAGCTCTGTTCTCCTGCTCAGGAATGCATCGTTCCCACCACTGTGATTGTACGAATCACTTCATCCCCAGTTTCCTCTGAATGGGTTTCCTCCTTTCCCCTGTGGAGAATGAGGTGTTCTGTGTCTATGAGACTGAATCAATGCTAATTCCCATACTGGCATTAACTAGCTTTCGGCAGAATAAAGACATTATGTTCTGTTAGTAAGAACTGTGCCGTTAATCTGTAATAAAGTGCAAATGTATTCCACAAAGTAAAGCACTACTCTCACATCGTTTTGTTTTTCCGCTTACCCTGACGTGATTTTGTTCTGACAGGagagacaataaaaaaaatgtcaatcaTCTCCATATAGATTTTAATAAAGCTATTTAAAATTGGGCACTTGAGGCACTCGAGGTATAGAGGAGAGATActtcatttcaatttcataGCGAGACAAATAGGTCAGGTCAGAAAGAGCTCATTAGTCAAACGCCTtttgaattaaactgaaaaggTTATGTGGTTCTCCATGCGCTCTGACCCCTCACTGGGAGTCAAATATTACTTTAAGAGAACCATCAATAAGACTGAAGGCATTCGTGGTGGAGAGGAGAACTTTCTGTCCgtgtaaaacacatttcaacatcGTTGAAATTCctacagatattttaattttgagcaGCATAGCgctaaattaaaatatctgtagGAATTTTCATTAGCTTTTCTCATACCCAAACTAACCCAACGTGACATTCTGTACATGATACAATATATAGAAGTTTTGACCTTTTCCTCTCATTAACTGTATTTCATTAACTCTCAATGTATAACAACTTTAAGATGCACTAAACAGCTTGTTATCAACACATGATCCCTAATCGTCTACATTAACGGTTTAAGAccttcatttattgttttgaattattctAAAATGAGATCTATTCCATGgtttataaaatcaaaactgtgtAAAGCAAAAACATCCAtgacatatttaacataatcggctgtaaataaatactttgaaaaaATGGTACAGTAGcacaaaaagaaatgtatcCTAACTTTAGTGTCAGTAGAGCATCCACAGGAAACTAATGCACATGACTTAACTGAGCAAGTATCAGTGCAATTGCTGGCCACAAAAGATGGATTCCCTCAAAAGAGCAATGCAGTGGTTTCTGTTCCAGAATCTGAACAGGACTGAGATCTGCTGACCGGGAAGATACTTCAGTTCTGCCATGTTCTTGGGACAGATCACGCACACTACTGACGGAAGCCTCCAGTGTTAGAGGATAGAAGTTCAGAGGAATACATGATACATTAATGTGATCANN

Function

NR:

description
protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148240 True 2068 lncRNA 0.37 1 19576964 19579031

Neighbor

gene id symbol gene type direction distance location
AMCG00018736 sart3 coding upstream 231206 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 249085 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 270224 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 280963 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 293998 19274909 ~ 19282966 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 26991 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 33594 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 97591 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 99740 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 108553 19687584 ~ 19701791 (+)
G118291 NA non-coding upstream 97008 19479691 ~ 19479956 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding upstream 103504 19467823 ~ 19473460 (+)
G118285 NA non-coding upstream 119981 19456142 ~ 19456983 (+)
G118013 NA non-coding upstream 846152 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 900738 18674274 ~ 18676226 (+)
G118410 NA non-coding downstream 415095 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 700257 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 723639 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 798257 20377288 ~ 20381442 (+)
G118608 NA non-coding downstream 859929 20438960 ~ 20443229 (+)
AMCG00018740 NA other upstream 94872 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 342613 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 668008 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 736869 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 855621 18719206 ~ 18721343 (+)
AMCG00018762 NA other downstream 392108 19971139 ~ 19974730 (+)
G118557 NA other downstream 680346 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 793188 20372219 ~ 20374812 (+)
G118623 NA other downstream 935129 20514160 ~ 20514491 (+)
G118635 NA other downstream 1013705 20592736 ~ 20593016 (+)

Expression


Co-expression Network