AMCG00019858 (paxip1,LOC106569237)


Basic Information

Item Value
gene id AMCG00019858
gene name paxip1,LOC106569237
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49935919 ~ 49956715 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019858
GCGTGACAAAACGTGACATACAGATCCGTAGGACTCAATAGGCATCAGCGCCTAGTGTAAAACTCATTTAGTTGGTATTATTGAGCATACAAATGTAATACCAATGTTCATTTTGACCACACTGTGCAGAAACACCCCCGTGAGCGCCGCGGTGCACCCCCGCCCCGGGAATGCGAGCGGCCAAGCGCGCCGAGCCGAGTTTGGCGCTGGTGCTGGAGGAAGCGCAAGAGATCCGATTAACTTTCTCGTGTTTTATATTCTTGGGAGTTTGATCACATTTCgggggttgttgttgttgttgtttttttttttaagcacggCACACAAACGATGTCGGATGAAGAGCTGAAGGTCCCAGACGAGCTTTTTAAAGATGTCAAGTTTTACGTGGTGGGAGATATTGACCAAAAGGTGGTGCAGCTGCTGAAGGCTGGCAAAGGCAAGGAAGTGTCTTACAATGCCCTCGCCACACACATCATCGCGGAGGACGGCGACAACCCGGAAGTCGGAGAATCGCGAGAGGTCTTTGACTTACCTGTTGTCAAGCCTTCTTGGGTGATTTTGTCAGTTCGATGTGGAGATCTTTTGCCAGTGACTGGGTTTTCACCAGAATCGGGGCAGGTGTTCTTCGGCGTCACAGCATGTCTACCCAAGATTCCTGAGGACCGCAGTGCGCTCTGGGCAATGATCACATTTTACGGAGGGGATTGCCAGCTAAACCTCAACAAGAAGTGCACACACCTAATTGTGCCGGAACCGAAAGGGGACAAGTATGAATGCGCCCTGAAGCACAGCAGCATCCGCATCGTGACTCCCGAGTGGGTGCTGGAATCTGTGGCGGACAAGGCCCGCAAGGACGAGGCGCCCTACCACCCGCGCCTCACCTACctggaggaggacgaggaggaggaggagagcgaggaggaggaggattaTGATCGGGGCTCACAGTCGGACGGCAGCTACGCGCGCAGCCGCTCCCGGAGGTCCAGCCTGGGCTCGTCCCGCGAGGGGTCCCCACTGAGCCGGGGCGGCCGCTGCTCCCCACAGGTGCAGAAGAAGGGCGAGCTGATGTTCGACGACTCCTCGGACTCGTCCCCGGAGAAGCAGGACCGCAACCTCAACTGGACCCCGGCCGAGTTGCCCCAGTCcgcctcctcatcctcctcgtcCTCATCCGCCGCCGCCTCCGCCAAGCGCCGGGGCCTCCCCCACGGGAAGGACTCGGGCCTCATCAACCTCTGCGCCAACGTCCCCCCCGTCCCGGGCAGCGCCCTGCCCCCAGAGACCAGGGCTGCTCTGGGCCCCAGCGGGCAGGGGGGTCTTGGGGACCGGCCAGAGATGCTGGGCCCCTGGAACCCGGCCGCCAGGACGTTGAGGAACATCACCAACAATGCCGACATCCAGCAGGTCACACGGCCCTCCAACGTGGCACATATCTTGCAGAGTCTCTCAGCCCCGACCAAATCCCTGGAACAGCAGGCGAATCAGAGCCAGCCCAGCCATGCCAACTCGCTGCTGTACAGCCAGGCGAAGCCACAGCCGGTGCCAGCCCAGGTCACCGCCGAGGCTCAGCAGCtattgcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacagctgcagcagcagcaaccaccacaacaacaacagcagcaacaacaacagcagacaCATCACCTGCAACAGCAACATCATCATCCTCAGCAGCTGACCCAGCAACACCTGCTGCACCTGCAGCCTCAGCAGCTcatgcagctgcagcagcagcaacaacaactgcagcagcagcagcagcagcagcaacagcaacagcagcagcagatccCACCGCAAGCGTTCTCACAGCCCCCACAGCAGCCACACCAGTTCCTGCAGCAGCCCCCCCACCAgcctcagcagcagcagctgcacCAGCAGATCttcccccagcagcagcagccacagtttgtccagcagcagcagcaacagctcCGGCCCCAACAGCTGCTCCGGCcctctctgcagcagcagcagctccagcaacatgccctgcagcagcagctgcaccagctccagcagcagcagcaacagcagcaccgattgcagctgcagcagcagcagcaacaacagcaacaacagctgCAGCAAAACCACCAGCCCCAGTCCCTGCACCCCCAGCAGCAACAGCACCCAGTGCACATCCAGCACCTGcaccagctgcagcagcagcagcagcagcagcagcagcagcatctcctgcaacagcagcagcacatgcagcagctgcagcagcaacagttccaacaacagcagcagcagcagcagcagcagcaacaacaacaacaacagcaacagcaacagcagcacctGCAGAACCAGAGCTCCCAGCAGCCGCTGCCCCACCCATCCCCGCAGttccagctccagcagcagcagcagcagcagcagcagcagcagcagcaacaacaggccTCCCTGCAGCCCCTGCAGCCCCTGCAGCACCACCAGCTGTTCGGGCACGATCCCGGACTGGACATCCCTGAAGACAGTTTCTTAATCGGCTGCATCTTTGCGATTGCTGATTATCCTGAGCAGATGTCTGACAAGCAGTTACTAGCCACCTGGAAGAGAATCATTCAAGCGCATGGAGGGACGGTGGACTCCTCTCTCAACCCGCGCTGCACGCACCTGCTGTGTGAGAGCCAAGTGAGCGCCCTGTTTGTGCAGGCATTGCGGGAGGGGCGGCGCTGCGTCACGGCGCACTGGCTCAACACCATCCTGAGGAAGAAGAAGATGGTGCCTCCTCACAGGACGCTGCACTTCCCCTTCGCCTTCCCCCCTGGTGGGAAGCCGTGCTCTCAGCACATCATTTCTGTCACTGGGTTTGTCGACACCGACCGGGATGACCTGAAGCTGATGGCGTACCTGGCAGGAGCCAAATACACCGGCTATCTCTGCCGCAGCAACACGGTGCTCATCTGCAAAGAACCCAGTGGGCTGAAGTACGAGAAGGCCAAGGAGTGGAGGATCCCGTGCGTCAATGCCCAGTGGCTCTGCGACATCCTGCTGGGCAACTTCGAGGCCTTGAGGCAGGCGCAGCACAGCCGCTACTCCGTGTTCAACCTGCAGGACCCCCTGGCCCCCAACCCGCACCTGATTCAGAACTTGCTGGGATCTTGGCGAGGCCCTCTGAAGATCTCTCCCGAAGCACTTGTGAGCATACGTCTTCAGCAGAAGCAGAAACCGAATGAGCCGGCTCCTCCGCCTCCCGCAAAGAAGCCCAGgATTGAAGATTTGCCAACACCAACTAAAAAGCTGTCTCCAGAATCCACCCCGACGGTGTTCTTCACTGGCTTCGAACCGGCCCAGGTCCAGCAGTATATAAAGAAGCTGTACGTGTTGGGGGGGGAGGTTGCGGAGTGCGCGCGGAAGTGCTCCCACCTGGTGGCCAACAAGGTGACGCGGACGGTGAAGTTCCTGACAGCCATGTCCATCGTGAAGCACATCGTCACCCCGGAGTGGCTCGAGGAGAGCTGGAAGACCCACAAGTTCGTTGaTGAGCAGAACTTCATGCTGAGAGACGCCGAGGCAGAGGTGCTGTTCTCCTTCAGCCTGGAGGAGTCGCTGAAGAGGGCCCATGCTGCGCCCCTCTTTAAGGGCAAGTATTTCTATATAACCCCTGGTATCTGTCCGAGCCTCATTACCATGAAAGCCATCGTGGAGTGCGCTGGGGGCAGGGTGCTCTCGAAGCAGCCCTCCTTCCGCAAGATCATGGAGCACAAGCAGAATAAGAGTTTACCCGAGATCATCCTGATATCATGTGAGAACGACCTGCACTTGTGCCGAGAGTATTTTGCCAAGAATATCGACGTCCACAATGCAGAGTTTGTCCTGACTGGAGTGCTGACCCAGACTCTGGACTATGAATCATATCCTTTCATGGTATCTGAGCAGAGAGGACTAAAGAGTTGA

Function

symbol description
paxip1 Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Orthologous to human PAXIP1 (PAX interacting protein 1).

NR:

description
PREDICTED: PAX-interacting protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14972 PAXIP1, PTIP; PAX-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019858 True 3978 mRNA 0.59 20 49935919 49956715

Neighbor

gene id symbol gene type direction distance location
AMCG00019855 NA coding upstream 298099 49628377 ~ 49637820 (+)
AMCG00019852 NA coding upstream 402775 49523139 ~ 49533144 (+)
AMCG00019848 NA coding upstream 573534 49341714 ~ 49362385 (+)
AMCG00019849 lmbr1,LOC106578611 coding upstream 607471 49324219 ~ 49328448 (+)
AMCG00019845 mnx1 coding upstream 647292 49285039 ~ 49288627 (+)
AMCG00019861 NA coding downstream 566976 50523691 ~ 50528261 (+)
AMCG00019864 NA coding downstream 661282 50617997 ~ 50680975 (+)
AMCG00019867 prkag2,LOC106590432 coding downstream 847676 50804391 ~ 50843575 (+)
G38011 NA non-coding upstream 89969 49845725 ~ 49845950 (+)
G38009 NA non-coding upstream 97273 49838414 ~ 49838646 (+)
G37990 NA non-coding upstream 168291 49699020 ~ 49767628 (+)
G37972 NA non-coding upstream 351547 49584123 ~ 49584372 (+)
G37971 NA non-coding upstream 358446 49577122 ~ 49577473 (+)
G38029 NA non-coding downstream 7825 49964540 ~ 49964828 (+)
G38046 LOC105030512,LOC106573797 non-coding downstream 529690 50486405 ~ 50489323 (+)
G38054 NA non-coding downstream 559111 50515826 ~ 50516153 (+)
G38184 NA non-coding downstream 1066458 51023173 ~ 51023430 (+)
G37968 NA other upstream 364433 49571187 ~ 49571486 (+)
G37964 NA other upstream 372705 49562894 ~ 49563214 (+)
G37962 NA other upstream 374536 49558482 ~ 49561383 (+)
G37779 NA other upstream 1484752 48450628 ~ 48451167 (+)
AMCG00019820 efr3a other upstream 2277918 47622768 ~ 47658001 (+)
G38084 NA other downstream 887040 50843755 ~ 50845879 (+)

Expression


Co-expression Network