G31784 (gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158)


Basic Information

Item Value
gene id G31784
gene name gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5540120 ~ 5540948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39766
tttatttctgaCGTGTGTGACATGGTTAAAACTCTTCATAGTGCAAAACATCAGCCGTACCCATTTTCACTGAGGAGTTTCTCTTGCTCCGTGATGTAGCATTCATCGCAGATCGCAAGGTACTCCATTGCCAGTTTGGCATCTTTCTTGTATGCTTTGCCAATGGCTCCTTTGTTGGGCTCAAACTGAACCACGTTGACAGATATGGGTTCTTTGAGAGCCTTTTCTGCCACAAGAGGGACCTTGGTGGCCCTGGCGTGACACAGCAAGTCAAAGCAGGAGCGGTCGGCACAGCCCACGATCTCAATCCATCCCTGAGAGAGACAAGTCACGAACACGGTTGGCCCTTCATCTTTCAACACAATCTCCAG

Function

symbol description
gars Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity; glycine-tRNA ligase activity; and identical protein binding activity. Predicted to be involved in diadenosine tetraphosphate biosynthetic process and tRNA aminoacylation for protein translation. Predicted to act upstream of or within glycyl-tRNA aminoacylation. Predicted to be located in several cellular components, including axon; extracellular exosome; and secretory granule. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2D and distal hereditary motor neuronopathy type 5A. Orthologous to human GARS1 (glycyl-tRNA synthetase 1).

NR:

description
PREDICTED: glycine--tRNA ligase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39766 True 371 lncRNA 0.49 2 5540120 5540948

Neighbor

gene id symbol gene type direction distance location
AMCG00019145 LOC103360289 coding downstream 104000 5419981 ~ 5436120 (-)
AMCG00019144 NA coding downstream 134414 5391065 ~ 5405706 (-)
AMCG00019142 NA coding downstream 190606 5326041 ~ 5349514 (-)
AMCG00019136 NA coding downstream 261404 5269238 ~ 5278716 (-)
AMCG00019135 myd88,LOC104955770 coding downstream 272476 5261715 ~ 5267644 (-)
AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding upstream 41280 5582228 ~ 5588342 (-)
AMCG00019150 LOC104941974 coding upstream 94754 5635702 ~ 5671986 (-)
AMCG00019152 NA coding upstream 214457 5755405 ~ 5773697 (-)
AMCG00019153 NA coding upstream 406941 5947889 ~ 5962147 (-)
AMCG00019155 NA coding upstream 585245 6126193 ~ 6145464 (-)
G31774 NA non-coding downstream 28190 5418996 ~ 5511930 (-)
G31572 NA non-coding downstream 862053 4677643 ~ 4678067 (-)
G31558 NA non-coding downstream 932263 4607563 ~ 4607857 (-)
G31526 LOC106599727,LOC106569160,LOC102785278 non-coding downstream 1174719 4365162 ~ 4365401 (-)
G31525 NA non-coding downstream 1175076 4364196 ~ 4365044 (-)
G31803 NA non-coding upstream 31849 5572797 ~ 5574265 (-)
G31825 NA non-coding upstream 208939 5749887 ~ 5752086 (-)
G31826 NA non-coding upstream 243820 5784768 ~ 5802915 (-)
G31829 NA non-coding upstream 276128 5817076 ~ 5817433 (-)
G31831 NA non-coding upstream 361424 5902372 ~ 5902637 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 553736 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 599453 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1310129 4220443 ~ 4229991 (-)
G31130 NA other downstream 3361470 2177980 ~ 2178650 (-)
G31082 NA other downstream 3456849 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 1139677 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 3306203 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3710204 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 6311160 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 6872206 12413154 ~ 12423320 (-)

Expression


Co-expression Network