AMCG00020286


Basic Information

Item Value
gene id AMCG00020286
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14564774 ~ 14578838 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020286
CGCTCGGCTTTCCACATCCCTGGCGGCTGCGTGTCCTATTTCATTTCCCAAAATTTTCTGCGAATTGGAGACTGCGCAGTGTGCATATACTTtcttaaagcaaaaaaaaaaaatctgctaatGCAAGCAGAATTGGGTCAATCTCGCATGCAGGCAGGATGTGCAGATAAGAAAAAATAGCATAGCCGGAGACACCGCAGTGGCAGACGGCAACACCAGACTCGGATACCCAGACAAGCAGAAGGAAGGACAGACACTGCAGAGATGGACTCCGGACACCTTCTCCTGAAAgtgtttttccttcagttcATTGCTTTTCAGCAAACTTTTGCTGCGCCTTCGCCCATCATCAAGTTCCCTGGGGATGACTCAAGCCCAAGAACAGACAAAGAAGTCGCGCTGCATTACCTGAACAAGTTCTATGGATGCCCAAAAGACAGATGCAACCTCATGATGCTCAAAGACACCCTGAAGAAAATGCAGAAGTTTTTCTCGCTGCCGGAGACCGGAGAGATCGACCAGAAAACCCTGGAGGTGATGAAGAAGCCTCGCTGTGGCGTCCCAGACGTGGCCAATTACAACTTCTTTCCTCGGAGGCCAAAGATTTTAGGCCACACCCCTGACATGGACGAGGAGACAATAGATGACGCTTTTGCCCGCGCCTTCAAAGTGTGGAGTGACGTCACGCCGCTCAAGTTCAGTCGCCTCATGGATGGAGAGGCCGACATCATGATCAATTTCGGGCGCTGGGAGCACGGAGACGGATACCCCTTCGACGGGAAAGATGTGAAGTATGGGAATGCCGAAGGGGAGTTCTGTAAGTTCCCCTTCAAGTTCATGGGGAAGGAGTACTCCAGCTGCACCCCCGAGGGCCGGGAGGATGGCTTCCTATGGTGCTCCACCACCTACAACTTCGACGATGACGGGAAGTACGGCTTCTGCCCCCATGAGCtgctCTTCACACTGGGAGGCAATGGGGAGGGTGCCCCCTGCAAGTTCCCCTTCACCTTCCAGGGCAACAAGTACCAGGGCTGCACCACCGAGGGCAGAGATGACGGCTACCGTTGGTGCGCTACGACCGAGGACTATGACCGGGACAAGAGTTACGGCTTCTGTCCCGAGACAGCCATGTCCACTGTTGGGGGAAACTCAGAGGGTGCTCCGTGCGTTTTCCCTTTCACCTTCCTGGGGGACAAGTACGAGGCCTGCACATCCTCGGGGCGCAGCGATGGCAAGCTGTGGTGTGCCTCCACCAGCAGCTACGACGACGACCGCAAATGGGGATTCTGTCCAGACCAAGGTTACAGTCTGTTCCTGGTAGCAGCCCATGAGTTTGGCCATGCCCTGGGACTGGAGCACTCTCAGGACCCAGGGGCACTGATGGCCCCCACCTACACCTACACCAGGAACTTCAAGCTGTCCAACGATGATATCCAGGGCATCCAGGAGCTCTACGGAGTGCCCACAGACAGGCCCCTGCCCCCAACTCAGGGCCCTGTCACACCCATGGACCTCTGCAGTATGGACATAGTGTTCGATGCAGTTTCTCAGATCAGGGGAGAGACCTTCTTCTTCAAGGGCAGATTCCTGTGGAGAACCAGCAACCCCAGGTCTAAGCCCACAGGCCCTATGCTCGTGGCCACCTTCTGGTCAGAGCTCCCGGAGACCTTCGACGCCGTGTATGAGAATCCCCTGGAAGAGAAGTCAGTCTTCTTTGCAGGTAATGAGGTCTGGGTGTATAAAGCCAGCGATCTGGAGAAGGGCTACCCCAAGAAAATTTCTACTCTGGGCCTGCCTGCAGACCTGCCTCGCATTGACGCTGCTTTCTCCttcaacaagaacaagaaaaccTATATCTTTGCAGGAGAGAAGTACAatgaagagaagaagaaaatggaCCCAGGCTTCCCTAAGCTGATTGCAGATGCCTGGAATGGCATCCCAGACAGTTTAGATGCAGCATTCAACATGAATGGGAATGGATACAGCTACTTCTTCAAAGACGCCTACTATCTGAAGCTGGATGACAGCAACCTCAAGATTGTCAAAATAGGAGATGTGAAAACAGACTGGCTGGGCTGCTGAGCTGCCAAGGAATGCCTGCGGACGCCAGCTCCCTGTCCCTCCTCTCCCCGCAccgtgcctgtctgtgtggattGTGGAGGCGGCCCTGCGCGGTGGTCCAGTCTGGCACGAACCCCCGCTCACTCTCACTTCCCAGCGCCAGGCTCACCTCTCCACAGCTGCATATAATCTCCCCACGTTGTACCTGGCAGGCCTAGTCTAAGGTTCAATGTGCACCTTGTTTGCAGATGCTGAATATATGCAAAGTGATGTTACTCAACCAGACGGAAACATACCGATTCTGTCGTTTTATGCCATAGTTTTGTAAGattgacagtttttgttttgatttaattttttatatcatgtttttggttttctttcattttgttttgtttccaaaagTGAAGGTGCACATTTCACACTGGGACTGAACCTTAgacttcagcagaatctcagaatggagaaaaaaatatattataataatgataatgataatgatgataataataattgcagatTTGTTTGTAATGTCGTACAGTGCAGCTCATTAGACTGCACACCAATCCTGTATTTCTGCAGGCCTGGGTATGGCCTCGCTGTCTCCCTTCTCCTGACAGTGTTGTAATGTAAGGCATTATTCCTTTTATCTGATTTATGAGGACAATTTTTTTAGCACTTTggattttgtctttttcttcagtAAATACGTAAGGATTGTGGTGACCATAGAAGTGTCCTTACCCGCTCTGTGTAACTCCGTTCCTCTTGTTTCTCTGACCGCGTAGACTGAACACTGGCACGGGTTGCCTAAAGGTTGTATGTAGTATGTTGCATGATGGAGTCATGGCAAGAACGTATCATTAAAGTATTGTTGAataatcatttgtattattgatctTATTGTTGtatcttggttttgttttatttctaaactCGACTATAAGTAGATTTGTAATTTGCTTTGTGCACTTTGTCAGTATACtttgttcaaaaataaataaaaatgaaataaaatgaatgatcaCTATTTGATGAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01398 MMP2; matrix metalloproteinase-2 (gelatinase A)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020286 True 3104 mRNA 0.49 13 14564774 14578838

Neighbor

gene id symbol gene type direction distance location
AMCG00020287 NA coding downstream 133 14554864 ~ 14564641 (-)
AMCG00020288 slc6a2,LOC103378986 coding downstream 18831 14497234 ~ 14545943 (-)
AMCG00020285 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107657107 coding downstream 79797 14462413 ~ 14484977 (-)
AMCG00020284 NA coding downstream 124230 14439531 ~ 14440544 (-)
AMCG00020283 NA coding downstream 126959 14436796 ~ 14437815 (-)
AMCG00020289 irx6a,irx6,LOC107713056,LOC107755049 coding upstream 55728 14634566 ~ 14639369 (-)
AMCG00020290 irx5a,irx5 coding upstream 192146 14770984 ~ 14775208 (-)
AMCG00020294 NA coding upstream 536069 15114907 ~ 15128403 (-)
AMCG00020293 NA coding upstream 551821 15130659 ~ 15145083 (-)
AMCG00020300 NA coding upstream 667435 15246273 ~ 15265762 (-)
G62066 NA non-coding downstream 163472 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 650608 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 741234 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 771843 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 813476 13751084 ~ 13751298 (-)
G62143 NA non-coding upstream 124673 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 453297 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 844317 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 1901692 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 2090059 16668897 ~ 16669511 (-)
G62061 NA other downstream 232367 14330522 ~ 14332407 (-)
G62011 NA other downstream 433205 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 730045 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 751771 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 756441 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1520062 16098900 ~ 16102739 (-)
G62409 NA other upstream 1540151 16118989 ~ 16120153 (-)
G62415 NA other upstream 1673950 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 1693613 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 2037485 16616323 ~ 16624970 (-)

Expression


Co-expression Network