AMCG00020614


Basic Information

Item Value
gene id AMCG00020614
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25886050 ~ 25905598 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020614
CAACCAGTCAGCTAACCACAAACTTCCTCTACTTCTCAGCTGACTGCTGGTTTAAAGACAACTCGGCTGTGGTGTCTGACCTCATTTTGTGACAGAGCACAGAGAGGGTGGACAAAGAGAGCTTTGTTTTGGAATTACAAAAAGTAGGAGAGCCGAAGACAATCCTGATCGAGACCCCATACCATGTTGTGTCTGCATATTGATCAACTGGAGGAACACAAACATCTGTCTTTGTGAACTTTGGGATCTGCAGGGGCGTAGTATAAAGTGTGCCATTAATGCTACACCCTACCTGAAGTTTAGTATTGCATAGACATTCctgatttaatattaatactatgCCATGTTCAAGCCTGATTGGTGTCAATCCTGCTATTGGATTCTACATCACCCAACAAGGCAGAACAAGTTATTAATTGTACAGATTCCTTGGAAAGGCAATCCctttttttaaaggcaaagtATAAATGCAGAGCTCTCCAATTTACAATATAAGCAACCTTTCTGTAGGTCTTCATTGTTCTGGGATTTGTAAaagttgtttttagttttgttgtggtgagtgtgtgtgtctatatgttCGGTGGAAGGTTTGTGGCTTATTGGTTATTGGTTGCAATGCTGAAGTCTTTTTCAGCTCAGTTctgtacttaaataaatatcaaatatatctGAGAGAAAATGGGACAATGCAAACCTTGCCTTTATTTTATGTGACTTAATTTCATGTAATTCCCTTTGGTTTTacaattgatatatttattttcctccctcctcccttttAAACAGAACCTGGCACACAGAGCAGAAAGAGGAGCGATGGCACACATGACCAGCATTTTAGAATCGGCTGTTAAACTCAACAATGGGAGGCAAATGCCACTGCTGGGTCTGGGCACATGGCAGAACAAACAACCTGGAAGTGTTCAAGACGCCATAGAAACAGCCATTACAGCTGGATACCGACACTTCGATACAGCCTACCTTTACAGGAATGAGGCCGAAATAGGGGAAGCCATTAAAGCCCAAATTCAACAGGGGAAGGTAAAACGAGAGGACTTGTTCATTGTCACCAAGCTCTGGCTCACTTTCTACTCCCCTGAAGACGTGCTTGTGGGTTTCAACAAGTCCTTAGAAGCCCTGCAGCTGGACTATGTCGACCTCTACCTAATGCACAGTCCTATGGCCTTGCAGAGACAAGGAGATGAGATATTCCCTAAAAAAGATGAGGAACTTCTGTTTTCTGACACGGATTATGTGGACACATGGAAGGCAATGGAGTCTCTGGTGAGCTCAGGCCGAGTGAAGAGCATCGGGGTGTCCAACTTCAACATCTCCCAGCTGCAGAGGCTGCTGTCTGTTGCCAAGATCCCGCCAGCTGTCAATCAGGTGGAGCTGCATCCATACCTGGTTCAATCAGACCTTGTGAAGTTCTGTAAAGCCAACAAAATCACTCTGACCGCTTTTAGTCCCTTTGGCTGCCCCGGAAGGCCCAAAGAATTGATGAAGTCACACCcgttttttcctttcaaagactCGTACGTCTCATGGAGAGCCTACTCAGACAGCAAAGAACAGACAATGAACGTTTTGGAAGGCACAGTGAAACTCAACAATGGGAGGCTGATGCCACTGCTGGGTCTGGGGACTTGGAagACGACCACAGCACAAGTACTCCAGGGCGCCACAGAGGCGGCCATTGCTGCTGGCTACCGACACATCGACACCGCCTACAGCTACAAGAATGAAACTGAGCTAGGGAAAGCCATCAGAGCCAAAATTCAGCAGGGCATCATCAAACGTGAGGACATGTTCATTGTCAGCAAGCTCTGGTGTACATACCATTCCCCAAAAGATGTGCCCCTGTGTTTGAACAAGTCCTTAGAAGACCTGCAGATGGATTATGTGGACCTCTACCTCATTCACTTCCCTGTGGCCTTCAAGcgAATAGATGATGAGTTGTTCCCCATGAAAGATGGCATGGTTCTTACCGAAGACACAGATTACATTGATACCTGGAAGGCAATGGAGTCTCTGGTGAGCTCAGGCCGAGTGAAGAGCATCGGGGTGTCCAACTTCAACATCTCCCAGCTGCAGAGGCTGCTGTCTGTTGCCAAGATCCCGCCAGCTGTCAATCAGGTGGAGCTGCATCCATACCTGGTTCAGTCAGACCTTGTGAAGTTCTGTAAAGTCAACAACATTGTTCTGACTGCTTACAGCCCCTTTGGGTCCCCGGGGAGGCCCAAAGAATACCACAGAGGAGCCATGGACCCAGAGAAGATACTGCAGGACCCAGTTGTGGCTGAGATTGCCAAGAAACACCAGAGGAGCTCAGCGCAGATCTTACTGAGGTATCATGTACAGCAAGGGATTGCTGTTATTCCAAAGAGTGTCAAACCCAACCACATATTGGAGAACACCAAGATTTTTGACTTCTCCTTGGATGAGGAAGACATGAAAGCCTTGTGTGGTCTGGACAGGGGGTGGAAAGCTTGTGTCCTGGATTCGGTCAAGACACATCCTTACTATCCTTTCGAATACTGAAGCATCTCAGAACTTAGCCCTCAGAGGAACACTGCGGTCTGGTGACAGACAAGAAGACCAGGGTTATGCATTGAGATCATGAAGACAATCCCAGGGTCTCAAAAAACGGTGTGCTTCCACAGCCTATTCAGTCCCTTCTAATACCAGAGAGGCATCATGTCCACAGTGTATTAAAATACTACTTCTGTTTTAGGAGTAGCATTTTCTGTCTGGTGAAGTAAAGTGCCTAAATAATCCGCAACATgttaatctaaaacaaataaatcaacctGTAAAaaagtttttgctttttctttcataatCTTTACATAATCTGAAGCTTGAGTTGAATCTCCTTGAGAATTATTTTGGACTTTTACTCAAAACCTATTCTcccataaaataaatgcatacatattttgtggTGATCATGACAAACACAAACTTAATCTATTCAATTGTCTATCTATGGGTATGTtgtttggagttttttttt
>TU80665
CTTGCATTCTCGCTCTTGTGGTTTTGGTAggtgtttgacttttttctGGATGAAGACGATATGAAAGCCCTGAAGAGTCTGGACAAAGGCTGGCGGTGTTGTATTATTGAGGAGATGAAGTCACACCcgttttttcctttcaaagactCGTACGTCTCATGGAGAGCCTGTGAGGGAATATCTGAAGTAGAGAACAagtaataattaagaaaatacatctaTCCTACCTCTTTAGCTAATTGATAGTTGTATGGAAAtgtgtataattgttttaacaATATTACACATGGTTTACTGCCCTGCCTAGTTTCCTCATCTCAGCAGAAGCTTTTGaactatatattttctgttcaaGACAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00011 AKR1B; aldehyde reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020614 True 3019 mRNA 0.45 18 25886050 25905598
TU80665 False 359 lncRNA 0.38 2 25895152 25895866

Neighbor

gene id symbol gene type direction distance location
AMCG00020612 NA coding downstream 18845 25861755 ~ 25867205 (-)
AMCG00020605 NA coding downstream 148575 25728979 ~ 25737475 (-)
AMCG00020602 NA coding downstream 204894 25643747 ~ 25681156 (-)
AMCG00020601 NA coding downstream 290782 25590014 ~ 25595268 (-)
AMCG00020595 chmp1a,LOC106573671 coding downstream 311440 25565583 ~ 25574610 (-)
AMCG00020615 NA coding upstream 4964 25910562 ~ 25917773 (-)
AMCG00020620 NA coding upstream 54780 25960378 ~ 25965307 (-)
AMCG00020618 NA coding upstream 60542 25966140 ~ 25971800 (-)
AMCG00020619 NA coding upstream 116144 26021742 ~ 26053728 (-)
AMCG00020622 cmip coding upstream 203421 26109019 ~ 26129019 (-)
G64418 NA non-coding downstream 106839 25691408 ~ 25779211 (-)
G64412 NA non-coding downstream 242677 25640570 ~ 25643373 (-)
G64342 NA non-coding downstream 420700 25464877 ~ 25465350 (-)
G64341 NA non-coding downstream 421934 25463540 ~ 25464116 (-)
G64340 NA non-coding downstream 424408 25461427 ~ 25461642 (-)
G64477 NA non-coding upstream 26101 25931699 ~ 25932142 (-)
G64510 NA non-coding upstream 79850 25985448 ~ 25989689 (-)
G64562 NA non-coding upstream 285963 26191561 ~ 26192678 (-)
G64608 NA non-coding upstream 521552 26427150 ~ 26428274 (-)
G64625 NA non-coding upstream 665904 26571502 ~ 26571716 (-)
AMCG00020604 NA other downstream 170593 25687275 ~ 25715457 (-)
G64298 NA other downstream 555480 25330084 ~ 25330570 (-)
AMCG00020590 LOC108250636 other downstream 583069 25289502 ~ 25302981 (-)
AMCG00020589 NA other downstream 601841 25272593 ~ 25284209 (-)
G64271 NA other downstream 643539 25242169 ~ 25242511 (-)
AMCG00020613 NA other upstream 29303 25934901 ~ 25948343 (-)
AMCG00020639 LOC107583916 other upstream 1340416 27246014 ~ 27249676 (-)
AMCG00020657 NA other upstream 2256004 28161602 ~ 28239074 (-)
G64811 NA other upstream 2320937 28226535 ~ 28229647 (-)
AMCG00020661 ss18l2 other upstream 2419439 28325037 ~ 28328312 (-)

Expression


Co-expression Network