AMCG00020828


Basic Information

Item Value
gene id AMCG00020828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34569612 ~ 34573502 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020828
CgcgtggctgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtatgtgcgtgtacgtgtgcgtgtgcgGGAAGGGATTCTAATCCGCATCCACGTTTCTCCACTTCGCCGACCCTCTCCAAATGAACGATTCCCCCCGTGGATCTAACCCGCACGTAACGACACCGAGTCCGGCGCCAGGAGTCAGCGACAGCCCCCCCCGGAGCCCCGGTCGGAAGAGCTCGCCGggtctctgtctgtcccccGCGGATCCCCAACGCCAGGCGAAGCGACTCCCCATCCGGGTCCTAAAGATGCTGACCGCGCACACGGGTCACCTGCTGCACCCCGAGTACCTCCAGCCCCTCACGTCTGCACCAGTCAGCATAGAGCTGGATGCCAAAAAGAGTCCGTTGGCGCTGTTGGCTCAGACTTGCTCACAGATCGGAAAGCCCGACCCGCCGCCCTCTTCCAAGCTGAACTCGGTGACGTCCAGCGGGCTCTGCGACAAGGAGCCCAGCGGCAGGGCGTCCGGCGGATCGGGTCTGAAGCTCGGCGCGGCGGAGCACCAGCAGTCCCTGGAGGACAAGTCCAGCTTTAAGCCTTATTCTAAGATCGGGGGCGACTGTCGGAAGGACGGGACGGGTTCAGGCGTGACCGGCAGCGGGGATAAGGCCGGGTTTAGGTTACCGAGCGCCGCTTGCCCGAGCTTCCCCCCCCACGCCATGTCGCCAAATCCCCGGGGCTCCTCTCCACCCCAGGCGCACCCACAGGCGCAATCAGCGCCGCGACAGACGCAAACGCCGCCCCAGCCGCAGCAACATCTACAGGACAGCAAAGCGCCTGGTGGCGACATGATTCACTCGGATAACGGCAGTAACGGCCACAGCCACACCGCCAAAAGAGACTCGGAGCCGGCCAAGGGCAGCTCGGACAGCGCGCACCTCGCCAACTCGAGCCACGGGCGCGCCACGGCCAACTCCAGCAGCGCCAGCTCGGAGAACAGCCCGCACCACGACGGCAAAGGCGAGTCCCTGCCGTCGCAGACAGGCCTGGGCTCCGGACACATCGCGCCCGTGTCGCCTTTCAAGCCGGGCCACTCGGTTTTCCCGCTGCCCCCCTCCAGTATGGGTTACCACGGTTCCATCGTGGGCGCATATGCGGGCTACCCGTCTCAGTTCGTACCAGGGTTGGATCATACCAAGTCCAGCCTGGTGGGGGGACAATTGGGGGTTCCAGGGAAGCACCCCAGCTCCAGCCCCCTGACTGGTGCCTCCCCCCCCTCCTTCATGCAGGGATTATGCAGGGACCCCTACTGCCTGTCCTACCCCAACGCGCCCCACCTGGGGGGCAGCAACTGCTCGTCCTGTGTGCAcgacccctcctcctccctgaaATCAGGCTACCCTCTGGTGTACCCCACCCACCCACTGCACTCCATCCACCCCTCCTCCCTGTCCTCCAGCGCCACCCCCACCCTGTCAGGACACCCCCTCTACACCTATGGTTTCATGCTGCAGAACGACCCACTGCCCCACATCTGCAACTGGGTGTCTGCTAGCGGGCCCTGCGACAAACGCTTTTCCTCCTCCGAGGAGCTCCTGGCGCACCTGCGCACCCACACTGCCCTCCCCGGAGCAGACAAGCTCCTGGCTGGGTACCCCTCCTCTGGACTGGGCAGCGCTGCGGCCGCCTGCCACCTGCACCTCCCCCCCACAGGGCCCGGGAGCCCCAGCGGCCTGCCCGGCTCCTTCTCCCTGCGCAGCCCCCACAGCCTCGGACTCAGCCGCTACCACCCGTACGGCAAGGCCCACCTGCCCAGCGCCGGCACCCTGCCCATGCACACACTGCAGGCCTCTGCCGGCCCTTACTACTCCCCCTACGCTCTGTACACCCAGAGGCTGGGCTCTGCGTCTGCACTGGGCTATCAATAGTAGCTACAGAGGAGCGAGAGAACAGACTGatgcaaattaaactgttttgttttctcctgtgtgtttttttttcttttactttctttcttttgtgtttcctttttctttaaaaaaaaaaagttttcaaattTTCTTTCCCAggactgaaatgtatttatttaccaagCGAAATTTATCCAAATGCATtgttctaattattattattattgttattattattattattattattatccatatTTTATAAAGTTCTGTGGTATGTGACATGGCAAAGATAAATCGTTCGGCCtcttacaaagaaaaacacactttttttttttcttttttttttcctgccagATCaaattatttctctctttttataaCCATATCATTTACGTTCTTCTGCTACTTCCTGCTCCAGTCTACAGCGGGAGGACCCTGCATGTTCTGTCTCAGTGCCATGGAAACACATCCTGGTCTGTGTTTAaaattccatttatttttgatttgtacAGCTTACAGAAGAgatgtaatattttttgtaatgtatttggaGTGAGGGGGAGACGGGGCACAATGAGGGGGgggtgtaaaaagaaaaacgacaacaacaaacattCATGAAAAACCTAAGCGATGGCAGTGCTATCCACaaaagaggagggggggggtcttattttgtttaataaatgaaaacttgattatatttaaaaaa

Function

GO:

id name namespace
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0031065 positive regulation of histone deacetylation biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0034333 adherens junction assembly biological_process
GO:0034111 negative regulation of homotypic cell-cell adhesion biological_process
GO:0030902 hindbrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0016363 nuclear matrix cellular_component
GO:0000118 histone deacetylase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0042826 histone deacetylase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020828 True 2613 mRNA 0.57 2 34569612 34573502

Neighbor

gene id symbol gene type direction distance location
AMCG00020829 LOC106531303,LOC108443303,LOC103397456,LOC105014365 coding downstream 16286 34529783 ~ 34553326 (-)
AMCG00020830 NA coding downstream 47291 34519200 ~ 34522321 (-)
AMCG00020822 NA coding downstream 113122 34443286 ~ 34456490 (-)
AMCG00020821 tmem150a,LOC106585116,LOC106580507 coding downstream 127884 34433425 ~ 34441728 (-)
AMCG00020815 NA coding downstream 254900 34289987 ~ 34314712 (-)
AMCG00020832 NA coding upstream 146202 34719704 ~ 34728364 (-)
AMCG00020834 LOC105015180,LOC106568058 coding upstream 155625 34729127 ~ 34741671 (-)
AMCG00020833 NA coding upstream 177877 34751379 ~ 34755314 (-)
AMCG00020831 LOC102225713 coding upstream 189691 34763193 ~ 34770642 (-)
AMCG00020839 mxd1 coding upstream 213769 34787271 ~ 34791056 (-)
G65957 NA non-coding downstream 53714 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 149422 34416657 ~ 34420190 (-)
G65872 NA non-coding downstream 349602 34218759 ~ 34220010 (-)
G65867 NA non-coding downstream 354053 34215057 ~ 34215559 (-)
G65858 NA non-coding downstream 452669 34116606 ~ 34116943 (-)
G66001 NA non-coding upstream 173439 34746941 ~ 34747361 (-)
G66003 NA non-coding upstream 175625 34749127 ~ 34749329 (-)
G66004 NA non-coding upstream 175942 34749444 ~ 34750150 (-)
G66087 NA non-coding upstream 325282 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 430076 35003578 ~ 35077562 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 329915 34222315 ~ 34239697 (-)
G65756 NA other downstream 1200507 33368625 ~ 33369105 (-)
G65679 NA other downstream 1678119 32886364 ~ 32891493 (-)
G65641 NA other downstream 1912593 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1958904 32607862 ~ 32610708 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 235102 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 265259 34838761 ~ 34841323 (-)
G66054 NA other upstream 289117 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 576066 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 771204 35344706 ~ 35349499 (-)

Expression


Co-expression Network