AMCG00021011 (tcf7l1,LOC106585616)


Basic Information

Item Value
gene id AMCG00021011
gene name tcf7l1,LOC106585616
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41284934 ~ 41299165 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021011
ATCCCCAGGACACCCCATCCTTCAGAGCTCTCGCCCTACTACCCCCTTTCTCCTGGAGCTGTTGGACAGATCCCCCATCCACTGGGATGGCTGGTGCCACAACAGGGCCAACCCATGTACTCAATACCTCCAGGTGGGTTCAGACACCCCTATCCGGCTCTGGCAATGAATGCATCCATGTCAAGCTTGGTGTCCAGTCGTTTTTCACCACACATGGTGCCCCATCCCTCTCACAGCCTACACCAGACTGGCATCCCCCATCCTGCCATTGTGAAATCGCCAGGACCAGTGAAGAAAGAGGAGGACAAGAAGCCACACATCAAGAAACCGCTCAATGCCTTCATGCTGTACATGAAGGAGATGAGAGCCAAAGTGGTGGCCGAGTGCACCCTCAAAGAGAGTGCGGCCATCAACCAGATCCTTGGCAGAAGGtggcatTCTCTGTCAAGAGAAGAACAGGCCAAATACTATGAACTGGCACGTAAAGAGAGGCAACTTCACTCCCAGCTCTACCCTGGCTGGTCGGCACGAGATAATTATGGAAAGCGgaaaaagaggaagagagattgCAAACCGCAAGACACAACACCAGAAGACAACTACTCGTCACGGAACAAGAAGCAGTGCGTGCAATATCTGCCACCGGAGAAAATGTGTGATAGCCCATCGTCATCGCATGGCAGCATGCTGGACTCCCCTGCCACCCCGTCGGCCGCTTTAGCGTCTCCTGCAGCTCCAGCGGCAACTCATTCCGAGCAAGCACAGCCCCTGTCGCTCACCACCAAGCCTGAAGGACGGTCACACCACCACTTTCCGGTCTCTGGCAAGCCAACTggctctacttcctcttccacCCAGCCTAGTATCTCCCTGCCTATTGGCTCCCCAGGCAGTCAATCACCCCTTCTCTCCCGGCCAATCCCCTTCACCTCCCTTCATCCTTCCATGCTGAGCCCACCCTCTTCTTTCCACCAGGCAGCCCTGCATTCCCATCATGCTTTACTCCAATCCCAGCCCCTCTCCTTGGTAACCAAATCaactgaa

Function

symbol description
tcf7l1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in canonical Wnt signaling pathway and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including axial mesoderm morphogenesis; regulation of transcription, DNA-templated; and somatic stem cell population maintenance. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: transcription factor 7-like 1-B isoform X2

GO: NA

KEGG:

id description
K04490 TCF7L1; transcription factor 7-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021011 True 1044 mRNA 0.55 7 41284934 41299165

Neighbor

gene id symbol gene type direction distance location
AMCG00021010 NA coding upstream 72885 41211431 ~ 41212049 (+)
AMCG00021007 NA coding upstream 169338 41091233 ~ 41115596 (+)
AMCG00021001 NA coding upstream 345368 40924447 ~ 40939566 (+)
AMCG00021002 NA coding upstream 371787 40910435 ~ 40913147 (+)
AMCG00021000 NA coding upstream 446161 40822569 ~ 40838773 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding downstream 69462 41368627 ~ 41370418 (+)
AMCG00021016 NA coding downstream 160312 41459477 ~ 41518845 (+)
AMCG00021009 NA coding downstream 279219 41578384 ~ 41589019 (+)
AMCG00021013 NA coding downstream 331514 41630679 ~ 41631432 (+)
AMCG00021015 npy8ar,LOC105911411 coding downstream 358505 41657670 ~ 41658791 (+)
G67272 NA non-coding upstream 245838 41038854 ~ 41039096 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding upstream 319022 40950099 ~ 40965912 (+)
G67207 NA non-coding upstream 493463 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 710078 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 713212 40570327 ~ 40571722 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 5022 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 33101 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 208442 41507607 ~ 41508101 (+)
G67371 NA non-coding downstream 320130 41619295 ~ 41619609 (+)
G67393 NA non-coding downstream 438082 41737247 ~ 41854669 (+)
AMCG00021005 LOC106580519 other upstream 222407 41051472 ~ 41062527 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 714719 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 963113 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 3147861 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3709078 37567036 ~ 37575856 (+)
G67323 NA other downstream 299058 41598223 ~ 41602113 (+)
G67459 NA other downstream 753765 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1124178 42423343 ~ 42465886 (+)

Expression


Co-expression Network