G65783 (LOC105024168,LOC106563219,LOC104947650,LOC103362088)


Basic Information

Item Value
gene id G65783
gene name LOC105024168,LOC106563219,LOC104947650,LOC103362088
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33831735 ~ 33835514 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82248
ttcatttgtttatttatttatttatttattattttattataaacttAGAATCAtcacattctttctttttacttgAATTCCCTCCACAAATTTggagccccccccacccagtgAGTCACGTTACAATCGGATTCCACCGAGAGAAAGCAGGAAGGTCCATCAAAATCACTGCACTACCCGGCCTCTCACCCACACCCATTGCAAAACCAGTGTATAATGCCAGTGCCACAGtacaagagcGGTGGGCACATGAGACATTCAAGAGCCTGGCACAGGGTATGCattcctcccctctcctcctcttgcCACCCCCTatcctgaaaacaaaactaaacaactcTCAGGGCAGAGACGAGTGTGGGGTGGATAATACCTAGAAGGAGGGCTACAGCTAACACAACCCGACAAACCACGTTGCAAAGCATCAAGACTAGGGGAaggtgcgagagagagagagagagagagaaggaagagagGGGGAAGCCGAGAGGTGACGGGTATCAGATTTCACGGAGAGCCTGCACGCAACCCAAATACACagtgataaaaaacaaaaaatgattatGGCACAAAAGATGAAGAACCCTCCCCTCCACCTTCCCCTCCATGCTCCATTTAGAAAAAGAATGATAGAAGAAAGaggaatataaaacaaaaacaaaagggcaCATGGAGAAGACTATGGGTTTCTAAGGTTTtgtaaaaaaagttttaattaagattGGTTCAATATTTTCGTTTTGGAGTTTGGATCCTGCTTCTAGTTCTAGCGTTGTGGTTCTAGTTTGGGCACCTTCGCTCGGGCTGCGGGAGGCAGAGGGcggggaagggagagagagggaaggagggaggtgagtgtgtgtgtgtgtgtgtgtgagtggggggCAGGGGAATTGACATGTTTTGcacatgtgtgtgcgtgtgcgtgcgtgtttgTCTTTTGGATGGGGAGAAGGCAGGTGTGGTGGTAGTGGGCAGTGGGGAGGGCAAGGGGTAGTGTCTGTGTTGTTGTCGTCATCATCATCGTTGTcgtcatttttttgttttgggtttattttatcttaatttttttttttttttttttttttttaactctttgtGGGGATTTCtcagttcagtttattttatccTGGAATATGTATAAGTTGTTGGTGGTGGCCACTGCGATGATGTTGTCTTGGGGGTGCCAGGCGGTGTGGAGGATCTTCTTGTTAAAGTCCAGGCTGTCCACGCTGATCTCGTCCTTCTTGCGCTTGCCGCCCGCGCACACTTTGCGGGGCTTGAGCACCGAGCGGGGCTTGCTGCTCTCGCGGGACGCCTCCAGTGTCACGTCCTTCCTCTGGCCGCGGTCAAACATCCGGAAAAAGTTGTTGTAGGAGCCCGTCATCACCAC

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82248 True 1393 lncRNA 0.47 2 33831735 33835514

Neighbor

gene id symbol gene type direction distance location
AMCG00020792 NA coding downstream 623959 33197632 ~ 33207776 (-)
AMCG00020790 NA coding downstream 675174 33146461 ~ 33156561 (-)
AMCG00020788 NA coding downstream 851210 32962541 ~ 32980525 (-)
AMCG00020787 NA coding downstream 1005106 32825655 ~ 32826629 (-)
AMCG00020785 NA coding downstream 1083463 32746746 ~ 32748272 (-)
AMCG00020798 NA coding upstream 80067 33915581 ~ 33923435 (-)
AMCG00020804 es1,LOC108430344,LOC107553036,LOC107714576 coding upstream 157295 33992809 ~ 33995725 (-)
AMCG00020805 NA coding upstream 187505 34023019 ~ 34027562 (-)
AMCG00020803 NA coding upstream 221440 34056954 ~ 34075604 (-)
AMCG00020807 NA coding upstream 277129 34112643 ~ 34113689 (-)
G65753 NA non-coding downstream 557291 33274176 ~ 33274444 (-)
G65571 NA non-coding downstream 1316118 32515403 ~ 32515617 (-)
G65468 NA non-coding downstream 1615978 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 1644024 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 1770438 32058318 ~ 32061297 (-)
G65813 NA non-coding upstream 125663 33961177 ~ 33962191 (-)
G65815 NA non-coding upstream 146276 33981790 ~ 33982026 (-)
G65844 NA non-coding upstream 214482 34049996 ~ 34051069 (-)
G65845 NA non-coding upstream 216946 34052460 ~ 34053108 (-)
G65858 NA non-coding upstream 281092 34116606 ~ 34116943 (-)
G65756 NA other downstream 462630 33368625 ~ 33369105 (-)
G65679 NA other downstream 940242 32886364 ~ 32891493 (-)
G65641 NA other downstream 1174716 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 1221027 32607862 ~ 32610708 (-)
AMCG00020767 NA other downstream 1272639 32554860 ~ 32559096 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other upstream 386801 34222315 ~ 34239697 (-)
AMCG00020836 snrnp27,snut3,LOC106585104 other upstream 973090 34808604 ~ 34814294 (-)
AMCG00020837 NA other upstream 1003247 34838761 ~ 34841323 (-)
G66054 NA other upstream 1027105 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 1314054 35149568 ~ 35170179 (-)

Expression


Co-expression Network