AMCG00021747


Basic Information

Item Value
gene id AMCG00021747
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27638582 ~ 27640909 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021747
CCCATGTTGGTTGTATTAAGAACCTGCAGGCTTTCCCCTCCGTAAACTACAACCCCCACACACCCTGGCACCTACAAACAAGCCACTTTCTTTTCAAACGAGTTACTGTACGTCAAACATACAGGttgcgtgtgtgttttgtaaagatGGCGGGGAACAATATGGGGGAGAAAGTTCACCCTTCAAGTAACAAAAATATTTCGCTTCCTATTTCGCGGGTAAAGTTAATTATGAAAAGCTCCCCTGAAGTCTCCAGCATTAACCAGGACGCTCTTTTTCTGACCGCCAAAGCAACGGAACTGTTTGTGCAGCATTTGGCCATGTACTCGTTTAAGAAAGGCTCTGGACAAGAGAACAAGTCGCTGACGTACAGTGACCTGGCAAACGCTGCAGAGGAATCGGAGACGTTTCAGTTTCTTgcagATATCCTTCCGAAAAAGATTCTAGCGCGGGATTACCTGAAGACCCTGGAGGAGAAAGGTGATGACAGTGATGACTAGAGGACAGTAGGGTGGGATGTGGAGGACCATGCAGATGCTGTCTCCAGTAACTACCTGAGACCCAGCAATCCCATGGCTCCTCTCAGGTCCACCCCCAGCAGACACCCTTAACAGCCTGCCCATTGCCAAAGAAAACTTACACCGTGTGTCCATTCACTGAGCTGGTCGCAGTTGGGGCTTatcttttggtttatttattttgagtggGAGGGttctcatttctgttttgttcattgTGTGTTCACATAGGACAGGGATGCTAGGCTTCGCCAGTTCTCTTTATCACCCTCAAAAGTTAAAGGGAGGGGTCAAGCAAGAGCCTAGCTAGAAAGATAAATAGTTCAGTTGAGCAGTTAAGTGCTCACATGGAAAGAAACCCAAATACCACTGTAGCTTTTCCAGATTAGATTTGTTCATCCTGATTTAGAGGTTGATTTAAATGCCCTGATATAAATATGACACTGATGATAAACTATGGCAATGTTTTCCTAGTTAGTGTACACTGAAATATTCCAAGATATTGAAATCTGGCCCAATAAGGTCCCTGTTGTAGGGAACATCAATGGCAGCTTTCTTTATGAACTCTCAGTGCATCCAGTTGTATAGTCTTCCTAGTTGCTGTACTTTCTGTTTATTCCTCAGCCACAGTGAATGAGTGAGTCTCCTTTGCCCTCCAAGCTCACACCAAGACTTTAACCACTGCTGGCAACAGTTAACCTCAGGAGACTGAGCTATAAAGCTGTGACAGATACGACTAAACGAATTGGGGCTAGattgcatattttttgtatgtttcaaaatgtgaaactgctataaaaaaatatattgaaaatgtgtgtatatattttttcaaccaACTCTGACTTTTTTCACAGCAGTCGTATTAAAGAAAATGCTCCCGTTTGTGATAGATTAATAAAgggtgttgtttttcattttacgTTTCGTTTTCTCTACCAAGCTAACCATGAGCAAGGTTTGAGTTTTGTATTTGGGGAAACGTCCCTCAGTGTTCTAATGCATTATcgaatttgtattttcatagtttttatGCCAAGTAAATATAAACATAGCAAGGAATACCTATACATCGTTAAAGAGAAACTATCCCACTTTATTAGAAAGAAGCATCTTCTAGTGAAAATAGATTCAGCATTTTGTCTCTCATAGATAGATTcctttctggaaaaaaaaaacatcttgtaaCAGTGAAAACAATGTGAAACCATTAGCAGACTGTTCATATAATAGGAGCAT

Function

GO: NA

KEGG:

id description
K11656 CHRAC1, CHRAC15; chromatin accessibility complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021747 True 1757 mRNA 0.41 3 27638582 27640909

Neighbor

gene id symbol gene type direction distance location
AMCG00021744 rplp1 coding downstream 51443 27584420 ~ 27587139 (-)
AMCG00021743 NA coding downstream 198320 27416270 ~ 27440262 (-)
AMCG00021738 cfap20 coding downstream 346586 27287252 ~ 27291996 (-)
AMCG00021735 LOC105904932,LOC108429636 coding downstream 377231 27236574 ~ 27261351 (-)
AMCG00021736 NA coding downstream 436277 27196092 ~ 27202305 (-)
AMCG00021755 NA coding upstream 574913 28215822 ~ 28218715 (-)
AMCG00021756 NA coding upstream 593731 28234640 ~ 28239140 (-)
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding upstream 945267 28586176 ~ 28591802 (-)
AMCG00021767 NA coding upstream 1402589 29043498 ~ 29047472 (-)
AMCG00021771 pqlc1 coding upstream 1621543 29262452 ~ 29264433 (-)
G88157 NA non-coding downstream 1862 27634904 ~ 27636720 (-)
G88154 NA non-coding downstream 6914 27627120 ~ 27631668 (-)
G88153 NA non-coding downstream 18491 27619820 ~ 27620091 (-)
G88095 NA non-coding downstream 228871 27409423 ~ 27409711 (-)
G87992 NA non-coding downstream 743246 26892476 ~ 26895336 (-)
G88190 NA non-coding upstream 462421 28103330 ~ 28103666 (-)
G88191 NA non-coding upstream 491657 28132566 ~ 28132863 (-)
G88201 NA non-coding upstream 625803 28266712 ~ 28267553 (-)
G88226 NA non-coding upstream 1056969 28697878 ~ 28698110 (-)
G88228 LOC107575789 non-coding upstream 1120287 28761196 ~ 28761972 (-)
AMCG00021723 hsf1 other downstream 718738 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 920074 26674078 ~ 26718508 (-)
G87871 NA other downstream 1484207 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 1533191 26091227 ~ 26105391 (-)
G87806 NA other downstream 1730577 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1140893 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 1428292 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2089168 29730077 ~ 29742808 (-)
G88527 NA other upstream 2696674 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 3236939 30877848 ~ 30888588 (-)

Expression


Co-expression Network