AMCG00021776


Basic Information

Item Value
gene id AMCG00021776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29318323 ~ 29321631 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021776
ATGGAGCATCGGCGAGAGGGCGTGGGTCTCCTGTCTCCCATCGAGGAGGGCAGCGCCGACGTGAGCCGGGACAGCGGCAATGTGTCTCAGAGCCACAGCAGCGCCTCGGTGCTGAGCGACTGCCTGAGCAGCGGCACGGTGTCGCAGAGCCCCAGCTTCAGCGCGGCTGCGGTGCGGGACGCAAGCGAGGAAGACGCGCTGCTGCTGACGCACACCGCGCACAGCTACTCCTCCTACCTGCGGGCCGACGCGGGAGAGCAGGCTCAGAGTTTGGAAAAGAGTTTGGAGGAGATGCTCACCAGAGTGGATGAGTTTGTTGGAATGCTTGACatgATCCGGAGTGACACTTCCCAGGTCGTAAATGAGAATCTACCTCAGATCCATAGGAAGTCGGAAGAAATGAGAGACATCTACAGAAAAATTGATAAGCTGGAAGCCTTTGTTAAGATGGTCGGCCTCAATGTGAATGTGTTGGAGGAGCAGGTCACCCAAGCGGAGGGTGATGTTGGAACTCTCCCCGGGGCCTTCAAAAAGATCTTCCGCACAATAAACGTCCCGTCCTTCCTCAATCTAGCCCCCGGAGAGCACCGCATCACCAAGAGCCTCCCTCTGTGTTCCGGACGGAGGAATATTTCCCTGCGCGCTCTGGACGCTGACAACACCAGCAAGGGATCAGGAGCAAGCCGCTGCATCAAGGCTTGA

Function

GO: NA

KEGG:

id description
K08366 BLOC1S4, CNO; biogenesis of lysosome-related organelles complex 1 subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021776 True 702 mRNA 0.58 5 29318323 29321631

Neighbor

gene id symbol gene type direction distance location
AMCG00021775 NA coding downstream 2882 29307887 ~ 29315441 (-)
AMCG00021773 NA coding downstream 32360 29281556 ~ 29285963 (-)
AMCG00021774 NA coding downstream 42974 29273092 ~ 29275349 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding downstream 46734 29268414 ~ 29271589 (-)
AMCG00021771 pqlc1 coding downstream 53890 29262452 ~ 29264433 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding upstream 6367 29327998 ~ 29332145 (-)
AMCG00021778 pard6g coding upstream 44265 29365896 ~ 29374669 (-)
AMCG00021780 NA coding upstream 65196 29386827 ~ 29402705 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding upstream 327144 29648775 ~ 29662887 (-)
AMCG00021787 NA coding upstream 520733 29842364 ~ 29846378 (-)
G88347 NA non-coding downstream 37450 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 487099 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 506358 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 532662 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 538613 28779343 ~ 28779710 (-)
G88434 NA non-coding upstream 516887 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 566814 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 1103673 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 1204115 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1640072 30961703 ~ 30962096 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 246563 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 535042 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2398479 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2599815 26674078 ~ 26718508 (-)
G87871 NA other downstream 3163948 26152105 ~ 26154375 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 408446 29730077 ~ 29742808 (-)
G88527 NA other upstream 1015952 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1556217 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1807952 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2741754 32063385 ~ 32069464 (-)

Expression


Co-expression Network