AMCG00021780


Basic Information

Item Value
gene id AMCG00021780
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29386827 ~ 29402705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021780
CTTCCCCTTATAGACACGTCCCTCTATCGTGGTACTATCCAGTGCTGGATTCATCTGACCTTGAACAAGTCCTCTGGATCAATATTCATTCATGTTTCGGGCAGCTGGAAAACTCCAGCTGGGGATGTTTCAGAGGTGTCTGCACACAAATTCCTCAAAATGGGCAATGGAAAAGCCTTGCATCTTAGTCACTACCCCAGGCATTTATGGtatcttcaaatgttttatacCCATCCTGGAGAAACACTTCACTGTCATCTACACTGAGGAATTTGCCAGGTGTAAAGAAAGGTTCGCAGACACCATCCAAGCTGTCTTATTGTGGTACACACCAACAGTTGACCGTGACCTGCTGCAGTCTTTGCCCAACCTGAAGGTGGTTGCAAACGGGGGAGTAGGGGTGGACCATCTTGACATACCCCTGATCAATAGCTTTGGGGTGAAAGTTACCAATACCCCCCAGGTTGTTGATAATGCCACTGCAGATCTAGGCATGGCCTTGATGTTGGCATCAGCTCGGAGACTTATAGAAGGTCACAACCATTTACTTTCCCATGAGACTGAATACTCATCCAAGGTGACCCTTGGCTTTGATGTCAGTGGTGCTACTCTTGGCATCATTGGAATGGGGAGGATTGGCTATAAGGTAGCCCAGCGAGCGCAAGGATTTGACATGAAAATCTTATATCATAATCGGAATAAGAGgacagaggaagaggagacaGCTGTGGGAGCCCATTACTGTGAGAAAATAGAGGAACTGCTGCAGAAGTCTGATTTTGTCATGTTGGTGGTGAACCTGTCTcctcagacacacaaactgatAGGAGCGAGGGAGTTGGCCCTGATGAAACCCACTAGCACACTCATTAACATCAGCAGAGGGTTGGTAGTGGACCAGGAAGCGCTTGTAGATGCTCTTCAGAAAGGAACGATTCACGGTGCAGCACTTGATGTCACATACCCTGAACCGCTGCCAAGAGATCACCCATTGCTCAGTCTTAAGAACGTCATTGTGTTGCCTCATTTGGGAACCAACACGTACCAGACAAGCCAGAAGATGGTCGAGAGGATGGTGACTAACACCCTGGCTGTTCTCAATGGCAGCCCGCCCCCCGATGAAGTGAGACCCTGACTTGTGGACTGTGAAGACGGGGGAACTTTACAGTGCACAGGATCCCCTGGAATCGCATGGGGCCCCTGGGTGTTGTCTTCTAAATGTTTGATGCATGTCAAATTGGGCTTTAAAACACAGTTAATTTCTTCATTCACTTAAAACTGACTTCCTGTGATGTTTCTTTTGTAGCGTTACCCCCAGCTTCAGGTTGCTTCTCCCTTCTTTTGGAAGAGAATGGGGCTAAAAGTTTTACTATTGTATTTTTGAATAGTTGAAAAAATAGTGGTGGTGAGATAAATTGCATAAATAGAAATCACTAAATGTGGttggaaatacaaaacacaatgtcaagttaaaaaatatataatcttgttaattgtaataaattaattaataaataaataaataaaaataaacaatacaaattcctGTAGAGTAAATTGATAAATGTTGTGCCACGTggaatgtatgtatgcattaacAATCTGTTCCACTAGAGGGAGAGATACTCAATATTTCCAATTGAAACGATCATAACGCCatttccctgaaaaagaaagacagccattaccgaatgggaagagccttctgacccgTCAATCAGTGAAAGCTTGTATCTAAGCTGCCcataggggccctgctgtcgGGAGGAAGACCCGCCTCCGGCGTCTGTGAAAATTCTCCTCCTGTCAGCTGTActctgccatttcttcatcatgAAGGCCGTCTGATCAAGCTACCCCAGAAGAGTAagggctgtctttctttttcatggaaccggggttatgataataatgtatcgttccctttcaagtcAAAAGACTTCCCATTTCCGAATGGGAAGGCTATACCAGAACTGTCGCGAGTCCTGATGCCTTACGTAAGCCCAATCCCATTATGGCAAGCGCCTGTAGTACCCAGGGTAGGGCTGTAAGGCTGTAGAACCTTgtctgttgaccggaccaggtcgcagcattACACAGGTCTTCTAGTGAAGCGCCATGAATGAGAGATCACAACATGGCCTGTATCCTTGTGGAGTGCGCTGAGATCGGGCATGGGGACtctagcagtctcataggtaaGCCGGATCATGTCTGGCAGTCGGTGTTTGGAAACAGCCCACCCTCTGGTAGTAGAACCATAGCATAACAGCTGATCAGATCTGTGGTTGTGTGCAGTCATTTCCATATAACACTTCAGTGCCCTGATGGGgcaaagtgtgtgtagtctgcggtcctcatctgACACATGTGGAGGGGGGTGAAAAAACTCCAGGACAATTGGTTGATTTATGTGAAATGCTGACACGACCTTAGGTAGGAAGGCCGGGTTAGTCCTCAGAGTAACTTTGTCATTGCTTccagagaagatcagacaggttTTATCCACAGTCAAGGCATGCATTTCGCTGATTCACTTCtgttgtgttgtctgtccgaactAGGACATGTCGAAAGAGGCACAGCACCAGCAGcactgcttgcagctcctgtgaCTTGATGTGGGCGGTCGACCAGAGACCACTCCACATCCCCTTCACCCCTATTGCAttccagaaataaaaaaggcaaacggagtgttattgtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021780 True 2756 mRNA 0.46 7 29386827 29402705

Neighbor

gene id symbol gene type direction distance location
AMCG00021778 pard6g coding downstream 12158 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 54682 29327998 ~ 29332145 (-)
AMCG00021776 NA coding downstream 65196 29318323 ~ 29321631 (-)
AMCG00021775 NA coding downstream 71386 29307887 ~ 29315441 (-)
AMCG00021773 NA coding downstream 100864 29281556 ~ 29285963 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding upstream 246070 29648775 ~ 29662887 (-)
AMCG00021787 NA coding upstream 439659 29842364 ~ 29846378 (-)
AMCG00021786 LOC106597666 coding upstream 572281 29974986 ~ 29986193 (-)
AMCG00021789 LOC105890378 coding upstream 640174 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 644625 30047330 ~ 30048871 (-)
G88347 NA non-coding downstream 105954 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 555603 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 574862 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 601166 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 607117 28779343 ~ 28779710 (-)
G88434 NA non-coding upstream 435813 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 485740 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 1022599 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 1123041 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1558998 30961703 ~ 30962096 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 315067 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 603546 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2466983 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2668319 26674078 ~ 26718508 (-)
G87871 NA other downstream 3232452 26152105 ~ 26154375 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 327372 29730077 ~ 29742808 (-)
G88527 NA other upstream 934878 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1475143 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1726878 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2660680 32063385 ~ 32069464 (-)

Expression


Co-expression Network