AMCG00021786 (LOC106597666)


Basic Information

Item Value
gene id AMCG00021786
gene name LOC106597666
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29974986 ~ 29986193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021786
GCTCTGTGCAATACTGCGGACGACTGAGCTGCAAGAATGCGCAGACTCAGGGAAGTCTGCGTGTCGCAAACAGCGCCTCTTCCTGTTGTGACGCATTGCTGTGGGTTGTATAGGTTGTGGCCTGTACCATATTTATTAGAAATAAGATAAGCGTCTTTTTTCTGTCGCATtcaatttatactttttatCGTGTATCTGTTGTGATAAGCaacatgtatcaaaataaaaatactccGTAGTTGTATGAATTTGTACATAATGGATTTATTCTCCGCTTGTTGACACTGGAAAGGGCGCCCCGGAGTTTCCTGTAATCCTAGGTGTTCAGTGTCAGCTTGCATAATGGCCGATCCGGTAGGAGTAGCCGATAAACCTACGGGAGATATCTTTGATAAAAACACCACCGTTGGTCACAGGACTGGGGTAGACATGACCACCGAGAGGATGGGGGCAGAGCAACTGGCATCTAAAGACAGGCAGGACTCGAGTAAAACCCCGACGGCAGCTGAATACTGCGAGAAGGTGCAGGAATGGATGTGGCAGTACTACTACGGGTACATGAACTGGCACAACTGGGTGGCGATGTCTTCTTACCCCTTTCCGCCTTGCCACCCGTCACAAACCGTGGCAGGACAGTCCCCGACAGACGGGCGCAATTGGTATAATAATCAGTTTCCTTTCTCCGTCCCCCCGTACTTTGCCGTCCCCCCGGGTGTCCCCTCGTCTCCTGCCGATGGGCAGACGGGACAGGTAACCGCCGGGACCTCGCCCGGGTCCACGGCCAGGCCAGCGCAACAGCAAAATGGAAATGCACAGCAGCCAGGACGGGAATATACTATTCCGTCTCCCCTACACAGATTCATAGCGGAAATGGTGGACTTCTTCATCCTTTTCTTCATAAAGGCGACCATTGTTCTCAGTATCATGCACTTCAGTGGGATGAAGGACATTTCCAAGTTTGCCATGCATTTCATCGTGGAAGAAATCGATGAGGACACATCCATGGAAGAACTGCAGAAGATGATGATCGTGGCTTTAATCTACAGGGTTTTAGTTTGCTTCTATGAGATCATTTGCATCTGGGGAGCTGGGGGGGCCACTCCAGGGAAGTTTCTGCTTGGGCTTCGCGTTGTCACTTGTGACACATCGGTTCTTGTTCGGCCCAACCGTGTTCTTGTGGTACCTGCATCTAACGTCACTTTATCTGCGTCTACAGTGAGAGCTCTGAACAAAAATTTCTCCATTGCCTTCTTTTTCCCTGCCTTCATCACCCTGCTGTTCTTCCAGCACAACAGGACTGTGTATGACATTGTAGCCGGCACGATTGTGGTCAAACGCAGTGGAGCCAGATGATACTTCTGGACTCGGTGCACAATGATGGTGAGGTTTACTGTAGGTACCTTGTTTGAACACAACTGTCTCTCACATTACCCGAATACCGTACGGGCACAGGAGCCGAAGAGAGGGTGAAGGAAAGAGCGAAGAACCAACAGAAAGGAATCCTGACTTCGTACAGGTGATCTCATGCAGTAgaaccaaaatgtttttgccGTTGACTTGAGACTCTGAGTGCCTAACAATAGAGCTATACCAATTCTACAATTCCTTCAAAGCCTGCTCTGAAAAGAAGTGGACAACCAGTTTACATCCTGGGAAAAAAACACTACTCTTGAGTTTTCACCATCCAATTCAGAGGGTATAGAATAATAGAAGTGATAGATTATCCCATGTTTCTATATGCAGGGAAAAACCTTGGTGAAATTGGCTTCCGTTATTTAATTAGGAACTTTTCAGAAAAATGCTGTATTGTGATTGAGTGTAAAGAAAACTGCATTAGTAGGTTTTAaaggaaaatctgaaaaaatgattgttaaattaaaaatgtctgaagTGTAACTACAATATATAACAGAGATAATATATGGTCTGAGGTTTTTCCAGTGAGATATGTATGTATCCCTGATATGATAGTtgtatttatcttgttttattgattcatttccAATCAGCCTGTCATATTGAATATGGAGGGCATATTGCTGTCAGTAGCAGTGCtatgtttattttgcaatcAGTTTGAAAACGTATAATGTCCTAAATAGTCTAATTTTACATGGTGCAATGCTTAACATAACTGTGTAAAGGATTCAGACAGTGTATTTTACTTTAAGGTCCCAAAGAAGACTATTAAAATGTCCAGGGGCTTTTCGCTTTGCCTGCAGCTACAAACCATGTGACCTAACAGAGCTCTGAGGAAGTCTATTTCTTAtccattgtttttctcttaaataattattagtagCCAGTTTAATTACCAGTTATATTTCTACAACCCCCAATAGTttgatatttgatttaaaaaaaaaaagtaatacattgttATGGAACGGGATAACCAGTTGTGGTTGACATACCACTTTTGTTTTATCTCGGTTCTTCGTTAAGTTGGGTATTGGGCTAAACCTGTAACATAACTAACTAACtcaataaattatattcagCGATTTAAGGAGTCATTGAATGTCGTTAAAAGCTAGGTTTAAAGCTCTGTGGTTTTAAGATTGGTCATACCTGTCTCATCATTAGGAAACTTCATATCCTTTTTTGTTATATTGGCAGCTTctaatattttgatttgaaattcCATGTTTATTATAGAGAAAATGCAAGTGTAACAGAGCTAGATTACAGGGGAAATGGCATGTTACTGTTTAATACCAGAAGCAATATCCCCCGAGAGAAGAGTGATATCCCAAATTTTAGCATGCATATGACTAGCATTATATTCCAATGTAAAATCCTAAAATGTAACTTTATTGCCTCAAATATAATGATCAGCATATCAGAACATTTAATACACTGTTCCATATACGTGACTTtctattttcttccttttgtaGTTTGAAATTAAAGAAATTGTACTACATTCATGTCTTCAATTGTATTGGCATGTCTGTATAGAAGTGTTTTCAATAGCCTGGGTAATTCTATTGTCCACTCACTGATTTTCACTCCTATCCCAGAAACACTGATTTACAATGACTTTCCAAGTGGCAGTCATTCATTGAATTTAAGTTGTGCGTGCTTCATTTTCAATGCTTGTATTACTCAGACAGCATTTTTGatgttatattttcattatcaaATTCCTCTTTTAGCTTTAATGAGATTTCTCCGCAAGTCAGACTTTGATTGTTTAGTTGAAGGCAATGTAATTCTATAAAAAGCTATGAAATGTCTCTAGAAAAGTATGACTTTGGAATCTGTAACATTCGTTACAGCAGTATTTGGGCAGAAGACACTTTAGGGTGAAAAATAAGtcaaaagctttattttctcttaagaACTTTATAGTAACAAAGCGGTATATAAGTGTGTGAAGTCTAATTATCAGCCTTACAGTATTTCCATTAAAttcctctatttatttttctcctgatTTCATTTGTACTCATTGTGACTGTGCTTCTGAGCCCTGCAGGCATTGAAAGGATAGTCAAGAAACGTTCATATGGACTTGCCTCATATGATAGTATCCAAAATGCATGCTTTGCAGTAATGTGTATTACAAAGTCAACAAAGGCTGGGTGTCAGTAATAGTCTGATTTGGCCTACAGATGTATAGAACCCCACTGTGACAAGGTGAATTTGTTAGCATGGTATCTGTGAAATTATGGGAATTTGAAGTAGAAGAGTAAGTGGTTGTCTTGTTCACACTCTcactgtttgtttgtgctgtacGTTGAATGCAGAATATCTCGCAGCCTTAGACGAACATTAATCTGATTCCCTTACCTTCCCAGTGTGATGGTCAGAATGTAGAGTCTCCACATCCCTACACTTTACAAAATCAGTTTAACTTTGGGAGCTGCACATTAGTTGACCACTGTCGCACCAAAAGCAAGAAATTCCTACATTTTTGCTTCATACGCCACACTCCTGCCCATTTCCTAGTCCATAAATGACGCCCTTGTTGAATCATAGCAAAGACATTAGCTCAGGTGATATTTGTATGGCAGCTGTGTAGATGTAACTTAACCCAACTGTTCCTTTGCTCAGAAATGGACTGAGGTCttgtttacatacatacaatgttggctttttttatatataaacacgaAGGGTGCAGTGTGACATATGCAAGCAGGCTAGGGCATTACATACACTGTCCAAGGCCATAGTGCATCTTGCTGACCTTCCCCTGCTCTTTATTCCAAAACCTAAGATGCAAGTGTTGTCAACATGTTTTTGCCTTCCTACATGTTTTGGGATTTGCAATGTAAATGGACTGCACATCAAAATATTGGTAATTGCTGACActcatgcttttttctttttcaggatttcagatttaaaagtttaaattatttaattgccgTTCAATTAAATTATCACTATGAACAATTAAAGGAAATGCAAATTGTAACAACTGTGTTTCTGTTCTCTCTTAATGACGTGTGTTGCATGAATTGCTCATCTTTaaaagtatgtatgtgtttCCATAAACATgatttcaattatgttttaatgaaatacaagcTTACCTCATAACATGTAAATGGGGTTAAGATCACTGTGACTAGGGTGTCAAGTGTGGAAATGTCAGAACCTTTTAGTCATCTGTATGATGTAAATAGTCTTCCTAGTAATTTACTAATTTATAGCTCTTCTGTCACAAGTAGTAATAGCGAAAGTacccaaaacatacattttgctATTTATCTCCTTTTAACCAACATCTTTatggttttaatacattttctaggCAATTTGATGTTTTCCACATGTG

Function

NR:

description
PREDICTED: protein FAM8A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021786 True 4789 mRNA 0.39 5 29974986 29986193

Neighbor

gene id symbol gene type direction distance location
AMCG00021787 NA coding downstream 128608 29842364 ~ 29846378 (-)
AMCG00021783 dtnbp1b,LOC108272579 coding downstream 312099 29648775 ~ 29662887 (-)
AMCG00021780 NA coding downstream 572281 29386827 ~ 29402705 (-)
AMCG00021778 pard6g coding downstream 600317 29365896 ~ 29374669 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding downstream 642841 29327998 ~ 29332145 (-)
AMCG00021789 LOC105890378 coding upstream 56686 30042879 ~ 30045102 (-)
AMCG00021788 NA coding upstream 61137 30047330 ~ 30048871 (-)
AMCG00021793 NA coding upstream 156029 30142222 ~ 30158707 (-)
AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding upstream 269838 30256031 ~ 30265454 (-)
AMCG00021797 LOC106570559,LOC105012503,LOC102295214 coding upstream 298479 30284672 ~ 30285136 (-)
G88435 NA non-coding downstream 27446 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 133447 29838518 ~ 29841539 (-)
G88347 NA non-coding downstream 694113 29279361 ~ 29280873 (-)
G88245 NA non-coding downstream 1143762 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 1163021 28811763 ~ 28811965 (-)
G88545 NA non-coding upstream 439111 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 539553 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 975510 30961703 ~ 30962096 (-)
G88736 NA non-coding upstream 1812559 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 1873216 31859409 ~ 31859833 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 232178 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 903226 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 1191705 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 3055142 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 3256478 26674078 ~ 26718508 (-)
G88527 NA other upstream 351390 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 891655 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1143390 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2077192 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 4273811 34260004 ~ 34356907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05959925_05961804 FAM8A1, FAM8A1B coding CI01000027 null 5959767 ~ 5961804 (-)