AMCG00021828 (LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775)


Basic Information

Item Value
gene id AMCG00021828
gene name LOC107600623,LOC107666844,LOC107551188,LOC105905365,LOC107705775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31310586 ~ 31350368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021828
AAACGTATTTGGCCTGAAGCCCTTGACTATAACAgtagtgtatgtttgtgtacattCAACATTTGTATAATATTCACTCTTCTGGGTATGTCAAAAGTGAAGTAATAATCAGTCAATCCATGTCCCATCTCATGCAGGCCAGTCATAGATCTTCCTAATCACCACAAAGCACCTCCCCTTAGCGTGTGACCTCTGAGACGTTTACGTCAATGACGTCAGAGCGTAGTGTCTGGAAAATGGCGTCCGTTTCGGAGTTATACGATGTGACCTGGGAAGTCATGCGAGATAAACTTCGGAAATGGAGGGAGGAAAATTTCCGGAACAGTGAACAGATAGTTGAAGTTGGGGAAGAATTAATACATGAGCATGCATCCAAGCTCGGGGATGACATTTGGATAATTTATGAGCAGGTGATGATAGCTGCTCTGGATTGCAGTCGGGATGACTTGGCATTGAGATGTCTACATGAACTGAGGAAGCAGTTTCCAGGTAGCCACAGAGTGAAACGATTAGCAGGCATGAGGCTTGAGGCTTTGGAAAGgtatGATGAAGCCTGCAAGTTATATGATGCAATATTACAAGATGATCCGACAAATACAGCTGCAAGAAAACGAAAGATTGCCATTCTGAAAGCACAAGGGAAAAGCACAGAAGCCATCAAAGAGCTGAATGAGTATCTGGAGCAGTTTGTTGGAGACCAAGAAGCCTGGCATGAACTTGCAGAACTTTACATCAATGAACAcgaCTATGCAAAAGCTGCATTTTGCTTGGAAGAGCTTATGATGACAAACCCACACAATCACTTATATTGCGAGCAGTATGCTGAGGTTAAGTATACACAAGGTGGAATTGACAACTTGGAGCTGTCCAGAAAGTATTTTGCACAGGCACTGAAGTTAAATAATAGAAATATGAGAGCTTTGTTTGGCCTGTATATGTTGGCAGGCCATGCAACAAAGGAGACCAAGTGTTCTCTAAAGGCGGTGGAAGAGATGCTGGAAACCATGCAGATTACACAGTCCTAGAAACCTGCCAGACTGGTCATATGCGGCAAACTCAGCCCATCACCTCAGCGCTCCCCATTCAGGATTGGACACTTTCACTGTTCTCTTACTTTACTACCTGGCActcagttttaattttacataaataaataacttcatgacaaattaaaaaaggaaaacggggaaaacaatttataaaatttATAAAACTAAACCTGGAATTGgaaatgtttgtgtaaaatgtccAGGCTGTACTAAGTGATGCCCCCTAGGTGCCCTTTCTAGACTGGACTAAGCCATGTGTAAGTAAATTAATGTTCATcacaaataatacacacatgtaGTTAccatccattttttttattattttttttataaattgtttgCAGTACTCTCCTACCATATTGTTACATCTTATTAAAAGTTTTACAGTCTTTGTTTAATAGCAACAAGTCCATTATTTTCCACTCATTACTATGTCAAGTTCAGCTTTTCCAGTGGAAGAAGCTGATGATAAATGAAAACTCCAGGTTTATCTGAATAATGATTTTTTCAGTCTCCCAGCCAATCATAAATATATCCTTATTTGTTTCCGTGTATGCAATAATGTGTCTCCCACTCGTTTGCTCAATATGGACAGAACAAGACTCTGCTTAAACAATTTAGAGAGGAGGTGGGTTCTCATTAAAACCTAAAACTGCAGCCTCTATATTAAAGTACTCTTCACACAGTTTACAGCTGTATGTCACAcccttcaattaaaaaaattgtatcaAATTCATTTTACACGGACAAGAAAAGGTCTGTAATTTGAGTTTAGTAAGTAATGTGTTGCACATTGCCAGTAATTAAAAGCGCAAcatcaatttttaaaatctggtaacatttaaaatgaaaaacaaaaagggttcCCCTAAAAGAAACGATTGGTTCTTTACTGCGTTACGTCTCATTGTTCAATTCTCATCCACCCATATAGGATCAGATGTTTGTGCCATTGGTTTTGTTTGCTAATTTCAGGCAACATTCTTGCAAACCTCATTGGCAGTTCCTTGAACAACTTTTGGaaagaatgtgatttgttttaatgagctgaaaataaaggaaaaccaTTTTAACGGCTGTGTTAATGAGAATTTTAG

Function

NR:

description
PREDICTED: ER membrane protein complex subunit 2 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23563 EMC2, TTC35; ER membrane protein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021828 True 2146 mRNA 0.38 11 31310586 31350368

Neighbor

gene id symbol gene type direction distance location
AMCG00021826 NA coding downstream 85205 31221983 ~ 31225381 (-)
AMCG00021831 NA coding downstream 201940 31093408 ~ 31108646 (-)
AMCG00021829 NA coding downstream 217216 31058059 ~ 31093370 (-)
AMCG00021827 ebag9,LOC107666870,LOC107705161,LOC107600620 coding downstream 259402 31042531 ~ 31051184 (-)
AMCG00021823 gdf6a coding downstream 282139 31000986 ~ 31028447 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding upstream 661074 32011442 ~ 32018134 (-)
AMCG00021847 NA coding upstream 681320 32031688 ~ 32037579 (-)
AMCG00021846 NA coding upstream 696742 32047110 ~ 32047584 (-)
AMCG00021845 NA coding upstream 745157 32095525 ~ 32097519 (-)
AMCG00021861 NA coding upstream 2656291 34006659 ~ 34014890 (-)
G88643 NA non-coding downstream 348490 30961703 ~ 30962096 (-)
G88562 NA non-coding downstream 747786 30525746 ~ 30562800 (-)
G88545 NA non-coding downstream 885034 30425304 ~ 30425552 (-)
G88435 NA non-coding downstream 1363046 29888445 ~ 29947540 (-)
G88434 NA non-coding downstream 1469047 29838518 ~ 29841539 (-)
G88736 NA non-coding upstream 448384 31798752 ~ 31836239 (-)
G88742 NA non-coding upstream 509041 31859409 ~ 31859833 (-)
G88762 NA non-coding upstream 638406 31988774 ~ 31989050 (-)
G88795 NA non-coding upstream 744334 32094702 ~ 32094939 (-)
G88831 NA non-coding upstream 1341903 32692271 ~ 32692496 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 178401 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 421998 30877848 ~ 30888588 (-)
G88527 NA other downstream 885974 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 1567778 29730077 ~ 29742808 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 2238826 29069201 ~ 29071760 (-)
AMCG00021849 NA other upstream 713017 32063385 ~ 32069464 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 2909636 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 2996620 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 3028333 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 4024648 35375016 ~ 35395771 (-)

Expression


Co-expression Network