AMCG00021860 (LOC107748562)


Basic Information

Item Value
gene id AMCG00021860
gene name LOC107748562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34179592 ~ 34189526 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021860
gatattgGCACAAGAGATCAAAACAGCAGATGATAAAGATTTGTATCTTGATGATGTTATGTCAGGAGATTATCCAGTAGATGACGACGATTTTAATTCGGGATCAGGCTCGGGAACAGGAGAATTGCCGGATGAGTCCAtcactgtgaaaacactgtACAATGTTCCAAAATCAGAACCAACCAGAGACTCGACTAAAGACTTCACACCGAAAGTTGAGACGTCAACATCCAGAATTATCCCCAGAAAGCCTGCCAGGACAGAGCCAACAGATATTTTCCCTGTTGATGGAGGGAATACAAATGATGTGACCAGCACTACCAGCGGACCTCCAGATAAATCTAAAAATGATGCAAATAAAGATGTATCAACAGAGATACGTTCAGAAAACCTCTTCCAGAGAACAGAAGTATTGGCAGctgtaattgctggtGGAGTAATTGGATTTCTATTTGCAATTTTCCTGATTTTGCTGCTGGTGTACCGCATGAGAAAGAAGGATGAGGGCAGCTATGACCTTGGGGAGCGCAAACCATCCAGTGCTGCCTATCAGAAAGCACCAACAAAGGAGTTTTATGCATAAACCTTTAAGAGAATCTCTGACTGAGATCAATGaactttttaaagaaatcaatttaaaaaataataaaaataaataaataaaaagcttttgcaTAGAGTAATGAagaccttttgtttttctttctttaaaggaAAGCCAACCAGGCTATTTTATGATAAATCCCAATTTACTTAAACATTTTCATGCATTCTTTGAAAAGgctgaaagacaaaaacacttcATTTGTAAAGGTGAGATACAAAATGGCATCCTTCAAAGAAGCCATTTAAATCACTGACTACTTTGTAACTGCAGCAGAacttatttgtaaaaaaaaaaaaagtataattaaaaagTGGAAATGAATATAATTGTTCTTTATCTATCCTATTCTTTTACTTTTGTCATAGCATGTCTGAGATTGATCTTACAAgatgtatttcattaatttatctgttttcaaatgttaaaattgCCTTTCTATAGTTTTCATGGTGCAAGTTTGTCTTCATATTAATTCAGATAAcgataaatgtaaattaatttttttccttcaggttacaatgttaattttttttttctttcatataaaGCTAGAAAGATGAagatttcacttttttgttttttgttttcctctcaaTGTAGCTTCAGACTATTGCGAAAGCAGCATCTTTGTACAAAGAAATTGGTCTTGAAGGTTGAAATTgcagatgaaaagaaaagttaaattgACATTACTCACATTTGtgttctctcctcctccttgcGTTTGACCTGCTCCATGTTTCAGAATGTCtcagtgttttctatttttaaatgtagaatatGCAGAGAAGCATAATATCTTGCATTTATATTGTGCTTTAAATCCTGAAGGATctcaaagtattttacaatgaTCAGTTGACAGTCTTCATCCACCACTGAAATAATGTGATGCCCAGCATCCATTCTTGCACCAGAAACTCACCACACTGTAGATAAAATTGAGAAGTGAGTTATTTAGCACATTAAACAATGGGGTTGATCTTTGTTTGGTAGTCCAGATTGAGAAAGCATGAACTGGAATTTAGCTACAGAATTCGTGACCCTGAGTTTAGCAACCCTTCTTTCAAAACGTGCCATGGACTCTTTTCTGGCCACGGGGCATCAGAGACTTTGGTGTAACATCACATATCAATGAAGGACGTTTGCTGTGGCTTTTGGTCCTGGTATGGTTGGTCCATAGGCATGATTCTATTAATTTCAGGGACAACATCTCTGAGAAGTGTAATACCTTTTTAGAAGTCAGGGATGTAATCTAAAAAATACGGTATGCCAGTCGCTGAAGtaaacagctttgtgtttttgtcttctggATAGTATGTTAGTTTCACTTTCTGTAAATATGGACACTAGAActtttgtatatgttttctgCTATTTTGTTCTTTACTatttctgaatcattcagaCCTCGAGAACCTGATAGGGTATTGTTTCAATATCCCTCGAGACACCCTTTGATGACGTGTATTTTCCTACAGATCTGTTTGTGGAGACCTGCATTCAGGCCTCTGTGTCTGATCAAATAAAGTTCAACATGCCTATCTTGATTCTTCCCTTTAAATCTAAGGCAGCCTTAGGAGTATTATCATTACAGATTCTGCATGGTTGTGAACTTGATCTTGGTAAAGATCAGACTTGGTACACTTAGTCATTGATATGAACTTTTCTCATGAAATCAATCTATTCTATCTTGTAACAAGGTTGAAAGAACCAGTAAATCCACTGTGGCTGGCAAAGCGCTTATTGAAAGCATAAATATGTGAATCATCTGATATGGACCTTCAGAAAGTGAGCAAGCAAGGTGGAGCATGAAAACGATCACATTGAGTATTGCGAATGTACTTTTGAAACCCTGTAATTTCTGCCCTTAACTGCAAACAGTATAGTTGTCCTTACTACACTAACCTTCTCACCAGAAGGTCCGATGGAAGCTACTGACATGCCTAAGCAAACCCAAAGACTTTTTAACAGTATTCTCGAAGTTGCTGCAGATTCCTATGGccacgttttttgttttgtttcttttttttttctttagggACCTGACCATTTTGAATCCAACTGCTTAATAGTtatgtagaaatatatattcacaaatgttttaagCCTTTGAAGTGCCTACCATTCTGAATTGTGCTTGTTCCTGTCTGGATTGAAAGATTTCTGTATTACAGGTGTGAGATAATTGCTGGTATTTTATAAGCACAGGCAACTGTAATGGTACCTTTTTTTAGTCTTACAGAAGCAGACAGTATTGTATCTATAATTTGAAACACACTACTGAATAAACATTGTGGCCTAATATTGAAATAA

Function

NR:

description
PREDICTED: syndecan-2-A-like

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0048565 digestive tract development biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0031012 extracellular matrix cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021860 True 2923 mRNA 0.36 4 34179592 34189526

Neighbor

gene id symbol gene type direction distance location
AMCG00021861 NA coding downstream 164702 34006659 ~ 34014890 (-)
AMCG00021845 NA coding downstream 2082073 32095525 ~ 32097519 (-)
AMCG00021846 NA coding downstream 2132008 32047110 ~ 32047584 (-)
AMCG00021847 NA coding downstream 2142013 32031688 ~ 32037579 (-)
AMCG00021848 med30,LOC107706236,LOC107754270 coding downstream 2161458 32011442 ~ 32018134 (-)
AMCG00021864 NA coding upstream 53339 34242865 ~ 34249647 (-)
AMCG00021865 NA coding upstream 62148 34251674 ~ 34260396 (-)
AMCG00021863 LOC107751906 coding upstream 74289 34263815 ~ 34274711 (-)
AMCG00021866 NA coding upstream 137632 34327158 ~ 34348033 (-)
AMCG00021870 NA coding upstream 556177 34745703 ~ 34757627 (-)
G88939 NA non-coding downstream 2111 34177047 ~ 34177481 (-)
G88918 NA non-coding downstream 198764 33976080 ~ 33980828 (-)
G88883 NA non-coding downstream 334140 33845114 ~ 33845452 (-)
G88873 NA non-coding downstream 418118 33761242 ~ 33761474 (-)
G88871 NA non-coding downstream 418972 33760272 ~ 33760620 (-)
G88991 NA non-coding upstream 94858 34284384 ~ 34286302 (-)
G89003 NA non-coding upstream 155109 34344635 ~ 34345989 (-)
G89011 NA non-coding upstream 230234 34419760 ~ 34420279 (-)
G89130 NA non-coding upstream 890047 35079573 ~ 35081173 (-)
G89212 NA non-coding upstream 1180580 35370106 ~ 35370480 (-)
AMCG00021849 NA other downstream 2110128 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 3047407 31129583 ~ 31132185 (-)
AMCG00021820 NA other downstream 3291004 30877848 ~ 30888588 (-)
G88527 NA other downstream 3754980 30337583 ~ 30424612 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other downstream 4436784 29730077 ~ 29742808 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other upstream 70478 34260004 ~ 34356907 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other upstream 157462 34346988 ~ 34380295 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other upstream 189175 34378701 ~ 34388010 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 1185490 35375016 ~ 35395771 (-)
G89368 NA other upstream 1754226 35943752 ~ 35946984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_09788926_09791625 SDC2 coding CI01000016 null 9788926 ~ 9791923 (+)
rainbow trout (Oncorhynchus mykiss) G2324754 NA non-coding NC_050572.1 CM025859.1 36606460 ~ 36636846 (-)
eurasian perch (Perca fluviatilis) G135903 NA non-coding NC_053124.1 CM020921.1 23874216 ~ 23911610 (+)