AMCG00021878 (grina)


Basic Information

Item Value
gene id AMCG00021878
gene name grina
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34766852 ~ 34784712 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021878
tTATGTAATCATTACAGCAGTTGCAGGGCACCCTGATGAAACGGAAAATGACCAAACTGCAACAATCAGCCTTGAGTGAGTGTCCCCCTTAATGTCATATGATGAGGGCGTGAGATGACGTCACCGTGCGCCAGGCACGACACGGTAGAGCTGTGtgtgaggaggaggacgagTCCGGCCCGAGGAAAAGCGAAACGGAAACATATTCTACCAAACAGAGGATTTTAAGTCTGGGATTATCAAGGGCTGCAGATCCACACTAATAAACGCACAAGAACAAGGTACTTCAAAGGATAACAAACATCCAGAAAGATGTCTCATGAAAAAGGCTTTATGGTTCCGGGTGAAAGCAATCCCTTGCATAACTCGGTCTATGGCCCCCAGAATCCAGCTGGGTTTGGGATGCCACCTCCCAATTTTGGCCAAAACCCCCCTGCATACGGTGGACCCGCAATGACTTATGGTGGCCCCCCTTACCCTCCCGATAATTTAGGACCGCCTGCCTATCCACAAGGAGCCCCTGGATTTGGACAGCCAACCTATCCTGTCCAGCAGCACCCATTCCCACAGATGCCTTTTCCACAGATGCCCTATCCCCAGGGTCCCTACCAGCAAGCACCCCAACAGCCCAGCTTCCAGCCCCAGATGCCTCCTCACACTGATGACCCATCTGttcCGCTGAACAGCCCTGGTTACCATGGAGATGTGCCACCATCTTACTATGACAATGAGGATTTCACTACCTCAGGCTTTGAGAACAAGTCCATCCGTCAGGCATTTATACGCaagGTGTTCATGGTGTTGACCGTGCAGCTTACGGTGACTTTTGCATTTGTGACAGTGTTCACGTTTGTGACAGAAGCCAAGCTGTTTGTGCGAAAGCACCCCTGGACTTACTACGTGTCCTATGCAAtcttctgtgtttctctcattGCGTTGAGCTGCTGTGGGGAATTCAGACGCAAACATCCATGGAATCTTGTTGCCCTGTCCATCCTGACCATGAGCCTGTCCTATATGGTGGGAATGATAGCCAGTTTTTACGACACAGACTCTGTTGTCATGGCAGTGGGGATCACTGCAGTGGTCTGCTTCACTGTGGTCCTCTTCTCCCTGCAGACGAAGTATGACTTCACCTCATGTTTTGGTGTGCTGTTCGTGTGTCTGATTGTGCTGATCCTGTTCTCCATTCTCTGTATCTTCATCCGGAACCGCATCCTACACATTGTCTATGCCTCTCTGGGAGCGCTGCTCTTCACTTGTTTCCTGGCTGTGGACACCCAGTTGCTtcttggaaacaaacaaatggctTTGAGCCCTGAAGAATATGTGTTTGCTGCCCTTAACCTCTACACAGATAtcattaacattttcctttatgtCCTGGCCATCATTGGGAGGGCTCGAAGggactaattaaaataaaggctttattatttgtttccctCAAATCTagagaagaaatgtatatacaccTTCAAGGTCTCTGTGGATTTGTTTCTGTATGCTCAGTGCTACATTATTTCAGCTTGGTTATTCATTTTCCAGCAGATCTTTGCAAACTGCAAGAAGTTTGACGTATTTtccaaaatcatttaaaaaataatccaaacactggcagaaaaaacaaaaacaataaaataataaaccgAAGAAGGAAAAGTATCTGATATTAAAGctgattattgatttatattttatgttgtatttttttttttttttttttttttttacttttt

Function

symbol description
grina Predicted to enable transmembrane transporter binding activity. Predicted to act upstream of or within endoplasmic reticulum calcium ion homeostasis and negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be integral component of membrane.

NR:

description
PREDICTED: protein lifeguard 1

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021878 True 1739 mRNA 0.46 7 34766852 34784712

Neighbor

gene id symbol gene type direction distance location
AMCG00021870 NA coding downstream 9225 34745703 ~ 34757627 (-)
AMCG00021866 NA coding downstream 418819 34327158 ~ 34348033 (-)
AMCG00021863 LOC107751906 coding downstream 492141 34263815 ~ 34274711 (-)
AMCG00021865 NA coding downstream 506456 34251674 ~ 34260396 (-)
AMCG00021864 NA coding downstream 517205 34242865 ~ 34249647 (-)
AMCG00021879 NA coding upstream 5556 34790268 ~ 34809602 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding upstream 26444 34811156 ~ 34820379 (-)
AMCG00021885 kif13a coding upstream 526577 35311289 ~ 35351633 (-)
AMCG00021889 NA coding upstream 883592 35668304 ~ 35672523 (-)
AMCG00021888 NA coding upstream 942707 35727419 ~ 35740510 (-)
G89011 NA non-coding downstream 346573 34419760 ~ 34420279 (-)
G89003 NA non-coding downstream 420863 34344635 ~ 34345989 (-)
G88991 NA non-coding downstream 480550 34284384 ~ 34286302 (-)
G88939 NA non-coding downstream 589371 34177047 ~ 34177481 (-)
G88918 NA non-coding downstream 786024 33976080 ~ 33980828 (-)
G89130 NA non-coding upstream 294861 35079573 ~ 35081173 (-)
G89212 NA non-coding upstream 585394 35370106 ~ 35370480 (-)
G89240 NA non-coding upstream 620345 35405057 ~ 35405340 (-)
G89247 NA non-coding upstream 669855 35454567 ~ 35455198 (-)
G89264 NA non-coding upstream 926751 35711463 ~ 35711716 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 378842 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 386557 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 409945 34260004 ~ 34356907 (-)
AMCG00021849 NA other downstream 2697388 32063385 ~ 32069464 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other downstream 3634667 31129583 ~ 31132185 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other upstream 590304 35375016 ~ 35395771 (-)
G89368 NA other upstream 1159040 35943752 ~ 35946984 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 1630167 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 1739797 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 1892394 36677106 ~ 36687642 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014327 mapk15 coding NC_007130.7 CM002903.2 46240171 ~ 46303622 (+)