AMCG00021887 (trip13,LOC106596102,LOC106590995)


Basic Information

Item Value
gene id AMCG00021887
gene name trip13,LOC106596102,LOC106590995
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35928591 ~ 35950291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021887
CTCCTGGATTATGTGTCCACCACTATATTCTTCTCAGACAAAAAAGTCGACAGCAACCTGATTGCATGGAACAGAGTTGTGTTGCTTCATGGCCCTCCAGGAACAGGGAAAACCTCTTTGTGTAAAGCTTTGGCTCAAAAGCTTTCAATTAGACTGTCAAACAGGTACAGATATGGCCAGTTTGTTGAGATAAACAGCCACAGTTTGTTCTCCAAATGGTTTTCAGAGagtggAAAACTTGTTACTAAGATGTTCCAAAAAATTCAGGAGTTGATAAATGACGAAGAAGCTCTCGTTTTTGTGCTCATTGATGAGGTGGAAAGTCTCACAGCAGCTCGTAATGCCTCCCAGGCTGGCACAGAGCCATCAGATGCAATCCGTGTGGTGAACTCTGTCCTAACTCAGCTAGACCAGATTAAAAGGTACCCCAATGTTGTAATATTGACAACCTCCAATGTAACTGAGAAAATAGACCTGGCTTTTGTAGACAGAGctgatataaaacaatacatcgGCCTACCTTCTCCTGATGCAATCTTCAACATATACCTTTCCTGCCTTGAAGAGCTAATGAAGtgCCAAATAATTTACCCCAAACAGCAGCTTCTTACTCTACGAGAACTTCAGATGCTTGGTTTCTTGGAGAACAATATATCTGAGCTCAGTCTTTCACTAAAGAGGATAGCA

Function

symbol description
trip13 Predicted to enable ATP binding activity. Predicted to be involved in several processes, including gamete generation; meiosis I; and meiotic recombination checkpoint signaling. Predicted to act upstream of or within cell differentiation and meiotic cell cycle. Predicted to be active in chromosome and nucleus. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 3. Orthologous to human TRIP13 (thyroid hormone receptor interactor 13).

NR:

description
PREDICTED: pachytene checkpoint protein 2 homolog

GO: NA

KEGG:

id description
K22399 TRIP13; pachytene checkpoint protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021887 True 687 mRNA 0.42 7 35928591 35950291

Neighbor

gene id symbol gene type direction distance location
AMCG00021890 NA coding downstream 129484 35798190 ~ 35799107 (-)
AMCG00021888 NA coding downstream 188081 35727419 ~ 35740510 (-)
AMCG00021889 NA coding downstream 256068 35668304 ~ 35672523 (-)
AMCG00021885 kif13a coding downstream 576958 35311289 ~ 35351633 (-)
AMCG00021877 vps28,LOC107696523,LOC107592928 coding downstream 1108212 34811156 ~ 34820379 (-)
AMCG00021891 NA coding upstream 76989 36027280 ~ 36030435 (-)
AMCG00021892 plekhg4b,LOC107729807 coding upstream 104683 36054974 ~ 36058550 (-)
AMCG00021898 NA coding upstream 672240 36622531 ~ 36625236 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 886137 36836428 ~ 36845633 (-)
AMCG00021901 NA coding upstream 917552 36867843 ~ 36874210 (-)
G89359 NA non-coding downstream 34877 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 110970 35817366 ~ 35817621 (-)
G89264 NA non-coding downstream 216875 35711463 ~ 35711716 (-)
G89247 NA non-coding downstream 473393 35454567 ~ 35455198 (-)
G89240 NA non-coding downstream 523251 35405057 ~ 35405340 (-)
G89373 NA non-coding upstream 16828 35967119 ~ 35985261 (-)
G89428 NA non-coding upstream 547903 36498194 ~ 36501828 (-)
G89431 NA non-coding upstream 561308 36511599 ~ 36511931 (-)
G89539 NA non-coding upstream 1308252 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 1516490 37466781 ~ 37467591 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 532820 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 1540581 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 1548296 34346988 ~ 34380295 (-)
AMCG00021867 LOC107596751,LOC107685553,LOC107743232 other downstream 1571684 34260004 ~ 34356907 (-)
AMCG00021849 NA other downstream 3859127 32063385 ~ 32069464 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other upstream 464588 36414879 ~ 36438350 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other upstream 574218 36524509 ~ 36537718 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 726815 36677106 ~ 36687642 (-)
G89598 NA other upstream 2311096 38261387 ~ 38283855 (-)
G89611 NA other upstream 2445280 38395571 ~ 38397755 (-)

Expression


Co-expression Network