AMCG00021896 (tmem170b,LOC107734028,LOC107669975)


Basic Information

Item Value
gene id AMCG00021896
gene name tmem170b,LOC107734028,LOC107669975
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36524509 ~ 36537718 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021896
CGACGCCTTTAAGTGATTCGTAGTGGGTCTAACAAAGTGGGAGGATATTGCTTGACTGCTGTCCTCATCATGGCTTCCAGTCCGCAAATGCATTTTCGGAGAAATACGGAGAATAGACAGGCGGACAGTCAAACTCATCTTAAAACAGAGGCGGACAGAATAAAGCTGTATTTCAGGTAGAGGCCACGGCGAAATCCCTTTTGGTCTCCTCGATGTCTTCATCAAGACCCTCCAGCTTGTATAGCAACGTGACAAAGAGTGCAAACCCGGGCAGCTCCGGCAGAAATATGAAGGATTATTCTATCAATCTGTCGGTGCAGCAAGTGCTGAGCCTTTGGGTTCAAGGTAGTGTACCAACACTTCAGCACTTCACAGAAATGTGGTACTGGGTGTTTCTGTGGGCCCTGTTCTCTTCGATGTTTGTGCACGGGGCAGTGGGAGTGCTGATGTTTATCATGCTGCAGAGACACAAGCAAGGCCGGCTCATCACCTTCATCCTGATCAGTGCTGGATTCTTGGCCTCTCTCACTGGTGGGGTCATCACaaGATTCTTGCCACACTCTGAAGAAGCAGCCTCTGCCCTCAACATGAGATGGGCTGAACAACAAGCATGCTCCTGGGCTTTGTATCAGAGCCTGCAGAAGACTTGA
>TU111584
TTTAAGTGATTCGTAGTGGGTCTAACAAAGTGGGAGGATATTGCTTGACTGCTGTCCTCATCATGGCTTCCAGTCCGCAAATGCATTTTCGGAGAAATACGGAGAATAGACAGGCGGACAGTCAAACTCATCTTAAAACAGAGGCGGACAGAATAAAGCTGTATTTCAGAAATGTGGTACTGGGTGTTTCTGTGGGCCCTGTTCTCTTCGATGTTTGTGCACGGGGCAGTGGGAGTGCTGATGTTTATCATGCTGCAGAGACACAAGCAAGGCCGGCTCATCACCTTCATCCTGATCAGTGCTGGATTCTTGGCCTCTCTCACTGGTGGGGTCATCACaaGTGCTGCAGTAGCTGGAGTGTATAGAGTAGCAGGGAAGGACATGGCCCCTATGGAAGCCCTGGTTTTCGGTGTTGGACAGACCGTGCTTACCATCCTCATCTCTGTCTCAAGGATTCTTGCCACACTCTGAAGAAGCAGCCTCTGCCCTCAACATGAGATGGGCTGAACAACAAGCATGCTCCTGGGCTTTGTATCAGAGCCTGCAGAAGACTTGATGGGAGCAGCCAAAAGGTGATGCTGATTGGAGGACAGTGTGGGTTTTGGAGTAGGACAGAATCCTGGCCTAGGTCAGCATTAACAGAGCACCCAAACTGGTGTTCAAGCTGTTACACTAGTGCACCTTATGTGCCTCTGTCACAAGCAAGGTGCAAGAGACACTATGTTACAGCATCACGAaggtttccatttaaaaaataaattaaaaaattaaaaatacttgcACAGTTAATGGTCAGCAGTAAGCCTGGCTAACAAAAGGACGAGTAAGCGCTGTAAAGGACATACCTGTATACATGGACTGCAAGGACTCTTCTCTGATCAGTGTCATGTGCCAATGTGACTttctaaatgtgtaaataaactgAACTTTCTA

Function

symbol description
tmem170b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM170B (transmembrane protein 170B).

NR:

description
PREDICTED: transmembrane protein 170B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021896 False 650 mRNA 0.50 3 36524886 36537718
TU111584 True 933 lncRNA 0.47 3 36524509 36537711

Neighbor

gene id symbol gene type direction distance location
AMCG00021892 plekhg4b,LOC107729807 coding downstream 465959 36054974 ~ 36058550 (-)
AMCG00021891 NA coding downstream 494074 36027280 ~ 36030435 (-)
AMCG00021887 trip13,LOC106596102,LOC106590995 coding downstream 574218 35928591 ~ 35950291 (-)
AMCG00021890 NA coding downstream 725402 35798190 ~ 35799107 (-)
AMCG00021888 NA coding downstream 783999 35727419 ~ 35740510 (-)
AMCG00021898 NA coding upstream 84813 36622531 ~ 36625236 (-)
AMCG00021902 LOC108435486,LOC106605067 coding upstream 298710 36836428 ~ 36845633 (-)
AMCG00021901 NA coding upstream 330125 36867843 ~ 36874210 (-)
AMCG00021903 atp9b coding upstream 406315 36944033 ~ 36975116 (-)
AMCG00021904 NA coding upstream 455133 36992851 ~ 36999640 (-)
G89431 NA non-coding downstream 12578 36511599 ~ 36511931 (-)
G89428 NA non-coding downstream 22681 36498194 ~ 36501828 (-)
G89373 NA non-coding downstream 539248 35967119 ~ 35985261 (-)
G89359 NA non-coding downstream 630795 35852036 ~ 35893714 (-)
G89272 LOC101154678 non-coding downstream 706888 35817366 ~ 35817621 (-)
G89539 NA non-coding upstream 720825 37258543 ~ 37258818 (-)
G89549 NA non-coding upstream 929063 37466781 ~ 37467591 (-)
G89553 NA non-coding upstream 1027256 37564974 ~ 37565215 (-)
G89559 NA non-coding upstream 1076679 37614397 ~ 37614596 (-)
G89562 NA non-coding upstream 1223099 37760817 ~ 37761021 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 86159 36414879 ~ 36438350 (-)
G89368 NA other downstream 577525 35943752 ~ 35946984 (-)
G89217 kif13a,LOC101479097,LOC102301062,LOC102786386 other downstream 1128738 35375016 ~ 35395771 (-)
AMCG00021868 slc6a19b,LOC108270036,LOC107596751,LOC107685553,LOC107743232,LOC106606020 other downstream 2136499 34378701 ~ 34388010 (-)
G89004 LOC107685553,LOC107596751,LOC107743232,LOC107662664,LOC108270036 other downstream 2144214 34346988 ~ 34380295 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other upstream 139388 36677106 ~ 36687642 (-)
G89598 NA other upstream 1723669 38261387 ~ 38283855 (-)
G89611 NA other upstream 1857853 38395571 ~ 38397755 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other upstream 2718161 39255879 ~ 39276056 (-)
G89765 NA other upstream 2948115 39485833 ~ 39486288 (-)

Expression


Co-expression Network