G88347


Basic Information

Item Value
gene id G88347
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29279361 ~ 29280873 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110254
ttgtgacatttaaaatctttatgTTCATCTGTGGgtcttctttttatttaatttgagaaatgaaactaaaatgcCCTATGATTTATTTAAGCAACTATTTTCAGTCTTGTGTAATTATagtaacaatacaattaataagaCTTTTGGAATCATGTGCACATTTATCCTAAGTGATGGCACCATCGCTGCtgttaatatatgtaataaaggTCTGcagtgactttaaaaaaaacaaaactaaaacactttTCAGTATagaaaagtttttatttgttgtcattttacCTATTTGCTTCTTAAAAGCAGTATTAGTTATAATGATGCTTTATCCTGGATTCAAACTACATTGGAACTTGTAATACAGTAGGGTAAagaaatgtgtgtggggggaagcatttttaaattccCTTTCCAGAAGTCTCTGTGTGTTCaatatttgtaaactttatttagCAGGTCTTCCCTGTCATTAGATCTTCAATGGAGAAAGCTTGAAATCACTGCTGTCTTTTTCAGCATCTTTAAAACCCAGTTTCAATTCCAgtgctttttaatgttaattcaTTTACATGTAGCATGAGTGGGTTTGAATATAAGATGCATTACACATTACACTAGTGGACCAAAGCCAAATGTCAGTCCTTTTGTTGAATAATTGtctatttcaaatgtttatcactctgtgtagtcattttattttactctgtgTCTGGGATCTAAAAGCTCAAATATATTAAGAGGATTTTCACTAGGGGGCAGTAGGTGCTGCTTTTTAAATGGTGCCCTACAGTACCACTTTACACCTGTATATGGTGTAAATGCATCGGGTTGAGAGGGAAAAGTGACCTGAAGTCAGCTGAACAACGTCAATTGGTTGctccaagttttttttttttaattaccctCTCAAACTTCTCAACTGTTTGTTGTGACATCATCTCTGCAACTTCCTCAGCATTCTTTGAccaaaaaatagttttgtagGTTTGAAATCCCACAGTAGTCTTGGAGAGAGCAGAGGAAAAAGCATGCTGCCTTTAGATGCATCTGTGCCACATCTTCCCCTTGTCCCCTCCCCAACCATGAAGGCCTTATCGCTTATGTGTTgtcttttggtttggttttttgGTCCATGTATATTGCAgtgtttaagaaaatacatgttgCTTTAAGAATgcacagtcttttttttttttttttttttaaatgcagttattaGAAACTGATATGGTATTAATTGTAGTACCAtaatatttaagtaaattacACCCTAGTTTATAGATAGTGAAagttaatttgatttttaaaaagcatatgtTGCCGCtcttattaaagtttaaaaaaataaactgttccaGGAACCCCATGTTTAATAACCCTCCATTTCCCTTTGGAAGAACTGTTCATTCGTAGAGATTGAAATGTGAGAAATTTTAGGTCAGCGTTATTCTTTCTCTTTTGCCTTTTATAGTACTAGTTTGTACTTGTAAAGTAATTTGTTtaggattttttt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU110254 True 1513 lncRNA 0.33 1 29279361 29280873

Neighbor

gene id symbol gene type direction distance location
AMCG00021774 NA coding downstream 4012 29273092 ~ 29275349 (-)
AMCG00021770 txnl4a,txnl4a.S,txn4a,LOC107593623,LOC106570226 coding downstream 7772 29268414 ~ 29271589 (-)
AMCG00021771 pqlc1 coding downstream 14928 29262452 ~ 29264433 (-)
AMCG00021767 NA coding downstream 231889 29043498 ~ 29047472 (-)
AMCG00021757 khdrbs3,LOC106521499,LOC106531515 coding downstream 687559 28586176 ~ 28591802 (-)
AMCG00021773 NA coding upstream 683 29281556 ~ 29285963 (-)
AMCG00021775 NA coding upstream 27014 29307887 ~ 29315441 (-)
AMCG00021776 NA coding upstream 37450 29318323 ~ 29321631 (-)
AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding upstream 47125 29327998 ~ 29332145 (-)
AMCG00021778 pard6g coding upstream 85023 29365896 ~ 29374669 (-)
G88245 NA non-coding downstream 448137 28830158 ~ 28831224 (-)
G88244 NA non-coding downstream 467396 28811763 ~ 28811965 (-)
G88243 zfat,LOC107723386 non-coding downstream 493700 28785166 ~ 28785661 (-)
G88241 NA non-coding downstream 499651 28779343 ~ 28779710 (-)
G88240 NA non-coding downstream 500676 28778293 ~ 28778685 (-)
G88434 NA non-coding upstream 557645 29838518 ~ 29841539 (-)
G88435 NA non-coding upstream 607572 29888445 ~ 29947540 (-)
G88545 NA non-coding upstream 1144431 30425304 ~ 30425552 (-)
G88562 NA non-coding upstream 1244873 30525746 ~ 30562800 (-)
G88643 NA non-coding upstream 1680830 30961703 ~ 30962096 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other downstream 207601 29069201 ~ 29071760 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other downstream 496080 28781802 ~ 28783281 (-)
AMCG00021723 hsf1 other downstream 2359517 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 2560853 26674078 ~ 26718508 (-)
G87871 NA other downstream 3124986 26152105 ~ 26154375 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 449204 29730077 ~ 29742808 (-)
G88527 NA other upstream 1056710 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 1596975 30877848 ~ 30888588 (-)
AMCG00021830 eny2,LOC100694417,LOC103393926 other upstream 1848710 31129583 ~ 31132185 (-)
AMCG00021849 NA other upstream 2782512 32063385 ~ 32069464 (-)

Expression


Co-expression Network